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5 protocols using embedding compound

1

Spinal Cord Tissue Preparation for Immunofluorescence

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The animals were deeply anesthetized by an intraperitoneal injection of sodium pentobarbital and then cardio-perfused with 4% PFA solution. The 8 mm-long spinal cord tissues, both 4.0 mm rostral and caudal to the lesion site, were dissected out and postfixed in the same fixative overnight at 4 °C. The tissues were then soaked in cold PBS containing 20% sucrose overnight at 4 °C, and subsequently frozen in embedding compound (Sakura Finetek, Tokyo, Japan). Sagittal serial sections 25-μm thick were prepared with a cryostat (model CM 1850; Leica, Nussloch, Germany), attached to adhesive-coated slides (Matsunami Glass), and dried before being used for immunofluorescence studies.
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2

Immunofluorescence Analysis of Skin Samples

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Human skin samples were fixed in 4% paraformaldehyde (Electron Microscopy Sciences, Hatfield, PA) for 24 hours at 4 °C, dehydrated in 30% sucrose (Sigma-Aldrich) for 24 hours at 4 °C, and then frozen in an embedding compound (Sakura Finetek, Tokyo, Japan) on dry ice. Next, 5-μm sections were rehydrated in 0.3% Triton X-100 (Pharmacia Biotech, Uppsala, Sweden) and blocked with 3% goat serum (Abcam, Cambridge, United Kingdom) for 1 hour. The sections were incubated with mouse anti-human CD69 mAbs (2.5 μg/ml; BD Biosciences) and rabbit anti-human CD103 mAbs (2.5 μg/ml; Abcam) overnight at 4 °C. After washing with 0.3% Triton X-100, the sections were incubated for 3 hours at room temperature with the following secondary antibodies: Alexa Fluor 488‒conjugated goat anti-mouse IgG and Alexa Fluor 647‒conjugated goat anti-rabbit IgG (1:500; Life Technologies, Carlsbad, CA). The sections were mounted with VECTASHIELD Mounting Medium supplemented with DAPI (Vector Laboratories, Burlingame, CA). Immunofluorescence images were obtained through fluorescence microscopy (BIOREVO BZ-9000; Keyence, Osaka, Japan). The cell number of CD69+CD103+ and CD69+CD103 was counted in the 10 randomized areas (×400 magnification) of three sections each from different normal skin samples, and then the average cell number in each section was determined and summarized.
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3

Tissue Harvesting and Analysis in Murine Models

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After the post-treatment memory assessment, mice were sacrificed and tissues were isolated for further analyses. Mice were anesthetized by intraperitoneal injection of Dolethal (Vetoquinol, Aartselaar, Belgium) (200 mg per kg body weight) followed by transcardial perfusion with Heparin-phosphate-buffered saline (PBS). Blood was collected via cardiac puncture and was centrifuged for 10 min at 200 g to separate serum, which was stored at −80 °C until use. Brains were isolated and divided into the forebrain (above bregma 0), the cerebellum, and the remaining two hemispheres. The cerebellum was snap-frozen and stored at −80 °C until sterol profiling. The left hemisphere was fixed in formalin and embedded in paraffin for immunohistochemistry. The cortex from the right hemisphere was snap-frozen and cryopreserved for Aβ ELISA analyses. Half of the liver was directly snap-frozen for mRNA expression analyses, the other half was stored at −80 °C in O.C.T. embedding compound (Sakura Finetek USA, Inc., Torrance, CA, USA) for Oil Red O staining.
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4

Brain Tissue Immunostaining Protocol

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After perfusion, brain segments were postfixed in 4% paraformaldehyde for 24 h, and then permeated with 20% sucrose in 0.1 M phosphate-buffered saline (PBS) (pH 7.4) for 24 h and 30% sucrose in 0.1 M PBS for 48 h at 4 °C. Brain segments were frozen in an embedding compound (Sakura Finetek, Tokyo, Japan) on dry ice. They were cut with a cryostat (Leica CM 1100; Leica, Wetzlar, Germany) at a thickness of 30 μm and collected in PBS at 4 °C to be processed immunohistochemically as free-floating sections. The sections were incubated for 48 h at 4 °C with primary antibodies: mouse anti-GFAP (1:2000; Cat. # AB5804, RRID: AB_10062746), rabbit anti-BDNF (1:2000; Cat. # sc-546, RRID:AB_630940). The sections were washed six times with 0.1 M PBS (10 min each) and then incubated for 3 h at room temperature with the secondary antibody: Alexa488- and Alexa546-conjugated mouse- and rabbit-IgGs.
(Cat. # A-11034, RRID:AB_2576217 and Cat. # A11030, RRID:AB_144695). Immunohistochemical images were obtained using a confocal laser microscope (Fluoview1000; Olympus, Tokyo, Japan) and digital images were captured with Fluoview1000 (Olympus).
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5

Immunohistochemistry of Brain Tissue

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Mice were anesthetized with 4% (v/v) isoflurane and perfused transcardially with saline, followed by 4% (w/v) paraformaldehyde in PBS. The brains were removed, postfixed overnight in a solution containing 4% (w/v) paraformaldehyde and 4% (w/v) sucrose in PBS, and cryoprotected in solutions containing 10% (w/v) and 20% (w/v) sucrose in PBS for 1 d each. The brains were then frozen in an embedding compound (Sakura Finetek) on dry ice before coronal sections (20 µm) were cut on a cryostat (CM 1100, Leica). The sections were fixed with 4% (w/v) paraformaldehyde for 30 min, permeabilized with 0.3% (v/v) Triton X-100 for 20 min, and treated with 3% (w/v) bovine serum albumin in PBS for 30 min to block nonspecific binding. Next, the sections were incubated for 3 d at 4°C with the following primary antibodies: rabbit anti-glial fibrillary acidic protein (GFAP; 1:1,000; Millipore), mouse anti-MCT1 (1:250; Abcam), mouse anti-MCT4 (1:50; Santa Cruz Biotechnology), or mouse anti-CD147 (1:50; Santa Cruz Biotechnology). After being washed, the sections were incubated for 1 h at room temperature with the following secondary antibodies: Alexa 488- or Alexa 546-conjugated anti-mouse or -rabbit IgG (Invitrogen). Fluorescence images were obtained using a confocal laser scanning microscope (LSM 780, Carl Zeiss, Jena, Germany).
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