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8 protocols using anti cd3 percp clone sk7

1

NK Cell Phenotyping by Flow Cytometry

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The following fluorochrome-conjugated monoclonal antibodies (mAbs) were used to evaluate NKA by flow cytometry: anti-CD3-PerCP (clone SK7, BD Bioscience, San Jose, CA, USA), anti-CD56-PE (clone NCAM16.2, BD Bioscience, San Jose, CA, USA), anti-CD107a/LAMP1-FITC (clone H4A3, BD Bioscience, San Jose, CA, USA), and anti-IFN-γ-FITC (clone 25723.11, BD Bioscience, San Jose, CA, USA). The following fluorochrome-conjugated mAbs were used for the analysis of NKG2D and 2B4 on NK cells: anti-CD3-PerCP (clone SK7, BD Bioscience, San Jose, CA, USA), anti-CD56-FITC (clone NCAM16.2, BD Bioscience, San Jose, CA, USA), anti-CD314/NKG2D-PE (clone 149810, R&D Systems, Minneapolis, MN, USA), anti-CD244/2B4-PE (clone C1.7, BD Bioscience), and mouse IgG1 isotype control (clone MOPC-21, BD Bioscience, San Jose, CA, USA).
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2

Identification of Pathogen-Specific T Cells

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HLA-A2 PE-labeled tetramers loaded with TcTLE peptide (TLEEFSAKL), derived from T. cruzi KMP-11 protein [22 (link)], and also HLA-A2 PE-labeled tetramers with a modified Flu-MP peptide (Flu-MP*; GILGFVTTL) derived from the influenza virus matrix protein [22 (link),26 (link)], and a modified CMV pp65 peptide (CMV*; DLSPMVATV), employed as controls, were produced by the National Institute of Health (NIH) Tetramer Facility (Atlanta, GA, USA). In total, 1 × 106 PBMCs per tube were stained with 0.5 μg/mL tetramers and anti-CD3-PerCP (clone SK7) and anti-CD8-FITC (clone SK1) conjugates (BD Biosciences, San José, CA, USA) for 20 minutes in the dark at room temperature. After the cells were washed with staining buffer (1% fetal bovine serum in 1X PBS), they were resuspended in 500 μL of 1X PBS. At least 50,000 events gated for CD3+ CD8+ T cells were acquired and analyzed using a FACSAria II flow cytometer (BD Immunocytometry Systems) and FlowJo 9.3.2 software (Tree Star, Inc.). The gating strategy is shown in Fig 1A and 1B. The cut-off point for HLA-A2/TcTLE tetramer CD8+ T cells was established at 0.063% after determining the average background value of K1-specific CD8+ T cells from HD (0.027%) plus three standard deviations (0.012%). A cut-off point for HLA-A2/Flu-MP* and HLA-A2/CMV* tetramer CD8+ T cells was fixed at 0.1% [26 (link)].
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3

Flow Cytometric Analysis of TIGIT Expression on NK Cells

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Changes in TIGIT expression levels on CD226+ NK cells were detected by flow cytometry. For staining, PBMCs were seeded in 96-well round-bottom plates (50,000–60,000 per well) and stimulated with IL-10 (10 ng/mL; R&D Systems), IL-12 + IL-15 (10 ng/mL and 50 ng/mL, respectively), or transforming growth factor-beta (TGF-β) (50 ng/mL; R&D Systems) respectively. Unstimulated cells were used as negative controls. Cells were incubated in RPMI media containing 10% fetal bovine serum (FBS; Thermo Fisher Scientific) and 1% penicillin/streptomycin (PS) for 24 h at 37°C with 5% CO2 in a total volume of 200 μL, then harvested, washed, and stained with anti-CD3-PerCP (clone SK7; BD Biosciences), anti-CD56-PE-Cy7 (clone B159; BD Biosciences), anti-CD16-APC-Cy7 (clone 3G8; BD Biosciences), and anti-TIGIT-APC (clone A15153G; Biolegend) in staining buffer on ice in the dark for 20 min. APC mouse IgG1, κ isotype control (clone MOPC-21, Biolegend) was used to define gates. Cells were then washed twice with PBS containing 2% FBS, re-suspended in staining buffer, and analyzed using a BD FACS Canto II cytometer (BD Biosciences).
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4

HIV-1 Antigen-Specific T-Cell Response Assay

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Whole blood samples were incubated with HIV-1 gag, pol and env peptide pools respectively at 37 °C for 5 h. Brefeldin-A (10 μg/ml, Sigma), GolgiStop (5 μg/ml, BD Biosciences) and anti-CD107a APC (clone H4A3, 20 μl/ml, BD Biosciences) were added immediately to the cell medium and incubated for 6 h. Samples incubated with phorbol-12-myristate-13-acetate (PMA) (1 mg/ml) plus ionomycin (1 mg/ml) were used as positive controls and samples incubated with DMSO (1 mg/ml, Sigma) were used as negative controls. Samples were surface-stained with live/dead dye Amcyan (Invitrogen, Carlsbad, CA, USA), anti-CD3-PerCP (clone SK7) and anti-CD56-PE (clone B159), and then lysed, permeabilized and intracellularly stained with anti-IFNγ Alexa Fluor700 (clone B27, BD Biosciences) and anti-CD107a APC (clone H4A3). All data were acquired on BD FACS Fortessa (BD Biosciences, San Jose, CA, USA) and analyzed by FlowJo software (Treestar, Ashland, OR, USA).
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5

Assessing iNKT Cell IFN-γ Production

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293T cells were co-transfected with Vpu and CD1d expression vectors and 24 h post transfection loaded with 100 ng/mL αGalCer (KRN7000; Biomol International) for 2 h. 293T cells were then co-incubated with the human CD4+ iNKT cell clone HDD323 (link) at a 1:2 ratio in the presence of brefeldin A (GolgiPLUG; 2 mg/mL; BD Biosciences) for 6 h. To assess iNKT cell IFN-γ production using flow cytometry, cells were stained with anti-CD3-PerCP (clone SK7; BD Biosciences) followed by saponin permeabilization and intracellular staining with anti-IFN-γ-APC (clone 25723.11; BD Biosciences).
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6

Multicolor Flow Cytometry Analysis of T-Cell Subsets

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An aliquot of 100 μL of EDTA whole blood or 50 μL of tissue cell suspension was incubated in the presence fluorescent labeled anti-human cell surface monoclonal antibodies (anti-CD3-PerCP/CloneSK7, anti-CD4-PE/Clone RPA-T4, anti-CD8-FITC/CloneHIT8a, anti-CD25-APC/CloneM-A251, anti-FoxP3-PE/Clone259D/C7, all purchased from BD Bioscience, San Diego, CA, USA) to identify helper and cytotoxic T-cell subsets and Tregs. Following incubation, cells were treated with 1 mL of erythrocyte lysing solution for 10 min at room temperature. After one wash step with PBS, cells were fixed in MFF fix solution (10 g/L of paraformaldehyde, 10,2 g/L of sodium cacodilate and 6.63 g/L of sodium chloride, pH7.2). Stained cells were stored at 4 °C up to 24 h prior flow cytometric acquisition. A total of 10,000/100,000 events were acquired for each blood or tissue samples to quantify T-cell subsets and Tregs, respectively. A dual laser FACScalibur flow cytometer (488 nm and 633 nm) was used for data acquisition and storage as FCS files. The FlowJo software (TreeStar Inc., Ashland, OR, USA) was used for data analysis. The results were expressed as percentage of positive cells within the lymphocyte gate.
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7

Phenotypic Analysis of Vδ1 and Vδ2 T-cells

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Phenotype analysis of Vδ1 and Vδ2 T-cells was performed by using the following monoclonal antibodies: anti-Vδ2 FITC (clone IMMU389, Beckman Coulter Immunotech, Marseille, FR), anti-Vδ1 FITC (clone TS8.2; Thermo Scientific, USA), anti-CD3 PerCP (clone SK7, BD Pharmingen, San Jose, CA, USA), anti-CD27 APC (clone L128, BD Biosciences, San Jose, CA, USA), anti-CD45RA CY-Chrome (clone HI100, BD Biosciences San Jose, CA, USA), anti-CD3 AMCyan (clone SK7, BD Biosciences, Usa). The differentiation profile of Vδ1 and Vδ2 T-cells was analysed by monitoring the expression of CD45RA and CD27 markers. Specifically, Naïve was defined as CD45RA+CD27+, Central Memory as CD45RA-CD27+, Effector Memory as CD45RA-CD27-, and terminally differentiated as CD45RA+CD27-. Briefly, PBMC (1×106 cells/ml) were incubated with mAbs cocktail for 10 min a 4°C, washed once and fixed with 1% paraformaldehyde (1% PFA, Sigma, St. Louis, MS). Sample acquisition and data analysis were performed by a FACS Canto II Flow Cytometer (Becton Dickinson) by using Diva software.
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8

NK Cell Phenotyping in HIV Infection

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To assess the expression of CD57, NKG2A and NKG2C on NK cells from HIV-1-infected and uninfected donors, 200 μl whole blood or 10 6 PBMC were stained with the following antibodies for 30 minutes at room temperature: anti-CD3 PerCP (clone SK7; BD Biosciences) or anti-CD3 BV785 (clone SK7; Biolegend), anti-CD56 PE-Cy7 (clone NCAM16.2; BD Biosciences), anti-CD57 Pacific Blue (clone HCD57; Biolegend), anti-NKG2C PE (clone 134591; R&D Systems) and anti-NKG2A APC (clone Z199; Beckman Coulter). After whole blood staining, red blood cells were lysed in BD FACS lysis solution (BD Biosciences) and cells were washed and fixed in 1% formaldehyde. After PBMC staining, cells were washed and fixed. Samples were acquired on an LSR Fortessa flow cytometer (BD Biosciences). Flow cytometry data were analyzed using FlowJo software (FlowJo LLC). For analysis of the expression of NKG2A on CD57 -, CD57 + NKG2C -and CD57 + NKG2C + NK cell subsets, donors with less than 100 total events in any of the three NK cell subsets were excluded from analysis.
Staining of pre-and post-ART cryopreserved samples from the IVRN was performed as described above for fresh samples, with the additional inclusion of a Live/Dead blue viability dye (Thermo Fisher).
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