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8 protocols using pepstatin a

1

Investigating CysLTR1 Inhibition in ARPE-19 Cells

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Polarized ARPE-19 cells were left untreated (DMSO = 0.001%) or treated with 100 nM montelukast (MTK, Selleckchem, TX, USA) or zafirlukast (ZTK, Selleckchem) for 3 hours (DMSO concentration ≤ 0.001%). Twenty-four hours before treatment, the culture medium was renewed. For western blot analysis, CysLTR1 inhibition was performed in the absence and presence of 10 μg/ml E64d (Selleckchem) and 10 μg/ml pepstatin A (Selleckchem) (DMSO concentration ≤ 0.2%). All treated cell samples were compared to a time-matched vehicle-treated control sample with or without lysosomal inhibitors.
For synchronization, cells were treated with 1 μM DEX for 2 hours or subjected to serum shock by using 50% FBS in DMEM/F12 medium.
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2

OMT-Mediated Autophagy Regulation in Cells

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OMT was purchased from Chia Tai Tianqing Pharmaceutical Group Co., Ltd. (Lianyungang, China); its purity was over 98%, as determined via high-performance liquid chromatography. 3-(4, 5-dimethylthiazol-2-yl)-2, 5-diphenyltetrazolium bromide (MTT), rapamycin (Rapa), 3-methyladenosine (3-MA), bafilomycin A1(Baf A1) and antibodies to microtubule-associated protein 1 light chain 3 (anti-LC3) were obtained from Sigma-Aldrich (St. Louis, MO, USA). Anti-HMGB1, anti-cleaved-poly(ADP-ribose) polymerase (anti-cleaved-PARP), anti-Bax, anti-Bcl-2, anti-mammalian target of rapamycin (anti-mTOR) and anti-p-mTOR(phospho S2448) antibodies were obtained from Abcam (Cambridge, UK). Anti-ATG7, anti-p62, anti-Akt and anti-P-Akt (Ser473)antibodies were obtained from Cell Signaling Technology (Danvers, MA, USA). Anti-β-actin antibodies were purchased from Biosen (Beijing, China), E64d, pepstatin A and MK-2206 2HCL were obtained from Selleck (Shanghai, China).
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3

Autophagy induction in ARPE-19 cells

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Polarized ARPE-19 cells were left untreated or treated with 10, 100 or 1000 nM ZK (Selleckchem, TX, USA) for 3, 6, 24 or 48 h (DMSO concentration ≤ 0.001%). For 48-h treatments, the compound-containing medium was renewed after 24 h. To prevent LC3-II degradation for protein analysis, the cells were cotreated with 10 µg/ml E64d (Selleckchem) and 10 µg/ml pepstatin A (Selleckchem) (DMSO concentration ≤ 0.2%). All treated cell samples were compared to a time-matched untreated control sample.
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4

Laryngeal Carcinoma Tissue Protocol

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This study was performed in accordance with institutional ethical guidelines and was approved by the Ethics Committee of the Nanfang Hospital. Informed written consent was obtained from each patient. Specimens from 87 patients with laryngeal carcinoma (two women and 85 men, aged 40 to 86 years) were collected from the laryngeal carcinoma tissue bank of the Nanfang Hospital. The tissue specimens were routinely frozen in liquid nitrogen, fixed in 4% paraformaldehyde, embedded in paraffin, and sectioned according to routine procedures.
The American Type Culture Collection (ATCC) human laryngeal carcinoma cell line Tu212 was purchased from Guangzhou Juyan Biological Technology (Guangzhou, China) and Hep-2 was purchased from Shanghai Aolu Biological Technology (Shanghai, China). The cells were cultured in Roswell Park Memorial Institute (RPMI)-1640 medium (Gibco, USA) supplemented with 10% fetal bovine serum (FBS; Gibco) and 1% penicillin/streptomycin. The cells were maintained at 37 °C in a humidified 5% CO2 atmosphere. Porcine pepsin (Sigma-Aldrich, St Louis, MO, USA) was used for pepsin exposure. The pepsin inhibitor pepstatin A and the interleukin-8 (IL-8) inhibitor SB225002 were synthetized by Selleckchem (Shanghai, China).
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5

Mannose Modulates DSS-Induced Colonic Epithelial Damage

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Human colonic epithelial NCM460 cells were cultured in RPMI 1640 medium with no glucose (Invitrogen, Carlsbad, CA, USA, 11879020) supplemented with 100 U/ml penicillin, 100 μg/ml streptomycin, 1 mM glucose, and 10% fetal bovine serum (FBS). The cells were treated with 2.0% DSS (MP Biomedicals, Santa Ana, CA, USA, molecular weight of 36,000–50,000) in the presence or absence of mannose (25 mM) for 24 h. To eliminate the effect of the mannose transporter, cells were pretreated with ouabain (1 μM, Selleck, S4016) for 4 h before incubation. Rotenone (5 μM, Merck, HY-B1756) was added simultaneously with DSS and mannose to inhibit mitochondrial respiratory activity. In some cases, protease inhibitors, such as the cathepsin B inhibitor CA-074 (10 μM, Selleck, HY-103350), cysteine protease inhibitor aloxistatin (1 μM, Selleck, S7393), serine protease inhibitor nafamostat mesylate (5 μM, Selleck, S1386), and aspartic protease inhibitor pepstatin A (10 μM, Selleck, S7381), were added simultaneously with DSS and mannose. Bafilomycin A1 (1 μM, Selleck, S1413) was added simultaneously with DSS and mannose for 24 h. mito-tempo (2 μM, Merck, HY-112879), a mitochondrial-targeted antioxidant, was used to stimulate cells along with DSS plus mannose stimulation.
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6

Amyloid-β Inhibitor Screening Protocol

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LY2886721, LY2811376, AZD3293, AZD3839, MK-8931, Pepstatin A, TAPI-1, Batimastat and DAPT were from Selleckchem; E2609 was from Sun-Shine Chemical; PF-06751979 was from MedChemExpree; β-secretase inhibitor IV was from Millipore; GI 254023X was from TOCRIS; Roburic acid was from Aobious; synthetic β-amyloid peptides are all from Anasepc; and recombinant human BACEl and BACE2 protein was from R&D system.
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7

Apoptosis and Autophagy Regulation in E. cava

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The DK from E. cava was prepared in previous our studies [20 (link),23 (link),25 (link)]. The MTT was purchased from Sigma Chemical Co. (St. Louis, MO, USA). The Z-VAD-fmk, 3MA, HCQ, E64D, and pepstatin A were purchased from Selleck Chemicals (Houston, TX, USA). The primary antibodies against caspase-3 (#2696), cleaved caspase-3 (#9664), PARP (#9542), cleaved PARP (#5625), Bcl-2 (#4223), Bax (#5023), Bim (#2933), Bak (#12105), LC3B (#3868) were purchased from Cell Signaling Technology (Danvers, MA, USA). Sequestosome 1 (SQSTM1, p62, sc-28359) and LAMP-1, (sc-20011) were purchased from Santa Cruz (St. Dallas, TX, USA), and actin (MAB1501) was purchased from Millipore (Billerica, MA, USA). All the remaining chemicals and reagents were purchased from Sigma-Aldrich (Merck Millipore, Darmstadt, Germany).
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8

Protease Inhibitor Experimental Protocol

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RA (R2625, Sigma-Aldrich, St. Louis, MO, United States), pepstatin A (S7381, Selleckchem, Houston, TX, USA), aloxistatin (E64d) (S7393, Selleckchem, Houston, TX, USA), and rapamycin (S1039, Selleckchem, Houston, TX, USA) were used for the experiment.
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