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Phenyl sepharose 6 fast flow column

Manufactured by GE Healthcare
Sourced in United Kingdom

Phenyl Sepharose 6 Fast Flow column is a chromatography medium used for the purification of proteins and other biomolecules. The column is composed of cross-linked agarose beads with covalently attached phenyl groups, which provide a hydrophobic surface for the separation of biomolecules based on their hydrophobic interactions.

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8 protocols using phenyl sepharose 6 fast flow column

1

Purification of Lysozyme from Culture

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Example 14

The culture supernatant was firstly precipitated with ammonium sulfate (80% saturation), then the precipitation was added water to adjust conductance to about 160 mS/cm. The solution was filtered with 0.45 um filter and then loaded into Phenyl Sepharose 6 Fast Flow column (GE Healthcare) equilibrated with 20 mM NaAc at pH4.5 with 1.5M (NH4)2504 added. A gradient decrease of (NH4)2504 concentration was applied as elution buffer from 1.8M to zero, and then elution fractions and flow-through fraction were collected to detect lysozyme activity. The fractions with lysozyme activity were analyzed by SDS-PAGE, pooled together, and then concentrated. The buffer of final sample was changed by 20 mM NaAc at pH4.5 for further evaluation. The protein concentration was determined by Qubit® Protein Assay Kit (Invitrogen, cat Q33212).

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2

Purification of Aspergillus oryzae O7MRA Enzyme

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Example 6

A slant of O7MRA was washed with 10 ml of YPM and inoculated into eight 2-liter flasks containing 400 ml of YPM medium, shaking at 30° C., 80 rpm. The culture was harvested on day 3 and filtered using a 0.45 μm DURAPORE Membrane (Millipore, Bedford, Mass., USA).

Example 7

A 2400 ml volume of filtered supernatant of Aspergillus oryzae O7MRA (Example 6) was precipitated with ammonium sulfate (80% saturation), re-dissolved in 50 ml of 20 mM Tris-HCl pH 7.0, dialyzed against the same buffer, and filtered through a 0.45 μm filter. The final volume was 80 ml. The solution was applied to a 40 ml Q SEPHAROSE® Fast Flow column (GE Healthcare, Buckinghamshire, UK) equilibrated with 20 mM Tris-HCl pH 7.0. Proteins were eluted with a linear 0-0.25 M NaCl gradient. Fractions eluted with 0.02-0.08 M NaCl were collected and further purified using a 40 ml Phenyl SEPHAROSE® 6 Fast Flow column (GE Healthcare, Buckinghamshire, UK) with a linear 1.2-0 M (NH4)2SO4 gradient. Fractions were analyzed by SDS-PAGE using a NUPAGE® NOVEX® 4-12% Bis-Tris Gel with 50 mM MES. The resulting gel was stained with INSTANTBLUE™. Fractions containing a band at approximately 44 kDa were pooled. Then the pooled solution was concentrated by ultrafiltration.

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3

Purification and Characterization of Recombinant Enzyme

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Example 5

A slant of the plate with the transformant was washed with 10 ml of YPM and inoculated into liquid YPM medium to generate broth for purification and characterization of the enzyme. The culture was harvested on day 3 and filtered using a 0.45 μm DURAPORE Membrane (Millipore, Bedford, Mass., USA).

A 1200 ml volume of filtered culture supernatant was precipitated with ammonium sulfate (80% saturation), re-dissolved in 50 ml of 20 mM NaAc pH 5.5, dialyzed against the same buffer, and filtered through a 0.45 μm filter. The final volume was 40 ml. The solution was applied to a 40 ml Q SEPHAROSE® Fast Flow column equilibrated with 20 mM NaAc pH 5.5. Proteins were eluted with a linear 0-0.5 M NaCl gradient. Fractions unbound to the column were collected and further purified using a 40 ml Phenyl SEPHAROSE® 6 Fast Flow column (GE Healthcare, Buckinghamshire, UK) with a linear 1.2-0 M (NH4)2SO4 gradient. Fractions were analyzed by SDS-PAGE using a NUPAGE® NOVEX® 4-12% Bis-Tris Gel with 50 mM MES. The resulting gel was stained with INSTANTBLUE™. Fractions containing a band at approximately 28 kDa were pooled and concentrated by ultrafiltration.

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4

Purification of Yeast Proteasome Complexes

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Yeast strains were grown in 18-l cultures at 30 °C in YPD into early stationary phase, and the yCPs were purified according to published procedures36 (link). In brief, 120 g yeast cells were solubilized in 150 ml of 50 mM KH2PO4/K2HPO4 buffer (pH 7.5) and disrupted with a French press. Cell debris were removed by centrifugation for 30 min at 21,000 r.p.m. (4 °C). The resulting supernatant was filtered and ammonium sulfate (saturated solution) was added to a final concentration of 30% (v/v). This solution was loaded on a Phenyl Sepharose 6 Fast Flow column (GE Healthcare) pre-equilibrated with 1 M ammonium sulfate in 20 mM KH2PO4/K2HPO4 (pH 7.5). CPs were eluted by applying a linear gradient from 1 to 0 M ammonium sulfate. Proteasome-containing fractions were pooled and loaded onto a hydroxyapatite column (Bio-Rad) equilibrated with 20 mM KH2PO4/K2HPO4 (pH 7.5). Elution of the CPs was achieved by increasing the phosphate buffer concentration from 20 to 500 mM. Anion-exchange chromatogaphy (Resource Q column (GE Healthcare), elution gradient from 0 to 500 mM sodium chloride in 20 mM Tris-HCl (pH 7.5)) and subsequent size-exclusion chromatography (Superose 6 10/300 GL (GE Healthcare), 20 mM Tris-HCl (pH 7.5) and 150 mM NaCl) resulted in pure CPs for crystallization and activity assays.
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5

Purification and Characterization of Aspergillus Enzyme

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Example 5

A slant of the expression strain, was washed with 10 ml of YPM and inoculated accordingly into 4 or 6 flasks of 2-liter each containing 400 ml of YPM medium to generate broth for purification and characterization of the enzyme. The culture was harvested on day 3 and filtered using a 0.45 μm DURAPORE Membrane (Millipore, Bedford, Mass., USA).

Example 6

A 800 ml volume of filtered supernatant of Aspergillus oryzae (Example 5) was precipitated with ammonium sulfate (80% saturation), the protein was re-dissolved in ddH2O, followed by adjusting conductivity to 145 ms/cm with (NH4)2SO4, and filtered through a 0.45 μm filter. The final volume was 60 ml. The solution was applied to a 60 ml Phenyl SEPHAROSE® 6 Fast Flow column (GE Healthcare, Buckinghamshire, UK) with a linear 1.2-0 M (NH4)2SO4 gradient. Fractions were analyzed by SDS-PAGE using a NUPAGE® NOVEX® 4-12% Bis-Tris Gel with 50 mM MES. The resulting gel was stained with INSTANTBLUE™. Fractions containing a band at approximately 34 kDa were pooled. Then the pooled solution was concentrated by ultrafiltration.

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6

Lysozyme Purification Using Ion Exchange and Hydrophobic Interaction Chromatography

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Example 27

The culture supernatant was firstly precipitated with ammonium sulfate (80% saturation), then dialyzed with 20 mM PBS at pH7.0. The solution was filtered with 0.45 um filter and then loaded into SP Fast Flow column (GE Healthcare) equilibrated with 20 mM PBS at pH7.0. A gradient of NaCl concentration was applied as elution buffer from zero to 1M, and then elution fractions and flow-through fraction were collected to detect lysozyme activity. The fractions with lysozyme activity were pooled and analyzed by SDS-PAGE, and then concentrated for further evaluation.

Since the purified sample has two bands, the collected sample was added ammonium sulfate with a final conductivity with 180 mS/cm, and then loaded into a Phenyl Sepharose 6 Fast Flow column (GE Healthcare) equilibrated with 20 mM PBS at pH7.0 with 1.8M (NH4)2504. A concentration gradient of (NH4)2504 was applied as elution buffer from 1.8 M to zero. The fractions with lysozyme activity were collected and carried out for SDS-PAGE. The sample also contains two bands, but MS data showed both bands are target proteins. The protein concentration was determined by Qubit® Protein Assay Kit (Invitrogen, cat Q33212).

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7

Isotopic Labeling of Cardiac Troponin C

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Cysteine-less cTnC was expressed in M9 minimal media as described by Sambrook et al (1989) [25] , containing 2.5 g/L glucose and 1 g/L 15NH4Cl, using the IPTG induction protocol of Studier et al (1990) [26] (link). The 15N-cTnC was then purified by hydrophobic interaction chromatography using a 1.5 cm×15 cm Phenyl Sepharose 6 Fast Flow column (GE Healthcare), as previously described [27] (link). cTnC fractions identified by SDS-PAGE were pooled before further purification on a 2.5 cm×7.5 cm DEAE-Sephadex A25 column (Sigma-Aldrich). Pure cTnC fractions eluted at ∼0.5 M KCl and were concentrated using an Amicon Ultra-15 centrifugal filtration device.
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8

Purification of 40 kDa Protein

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Example 12

A 100 ml volume of filtered Biotouch XC300 was precipitated with ammonium sulfate (80% saturation), re-dissolved in 40 ml of 20 mM Tris-HCl pH 7.0, dialyzed against the same buffer, and filtered through a 0.45 μm filter. The final volume was 80 ml. The solution was applied to a 40 ml Q SEPHAROSE® Fast Flow column equilibrated with 20 mM Tris-HCl pH 7.0. Proteins were eluted with a linear 0-0.5 M NaCl gradient. Fractions unbound to the column were collected and further purified using a 40 ml Phenyl SEPHAROSE® 6 Fast Flow column (GE Healthcare, Buckinghamshire, UK) with a linear 1.2-0 M (NH4)2SO4 gradient. Fractions were analyzed by SDS-PAGE using a NUPAGE® NOVEX® 4-12% Bis-Tris Gel with 50 mM MES. The resulting gel was stained with INSTANTBLUE™. Fractions containing a band at approximately 40 kDa were pooled. Then the pooled solution was concentrated by ultrafiltration.

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