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13 protocols using ex527

1

Murine Osteoblast Induction and Inflammation

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MC3T3-E1, a murine osteoblastic cell line, was purchased from the Shanghai Cell Bank of the Chinese Academy of Sciences (MC3T3-E1 Subclone 14). Cells were cultured in MEM alpha modification medium (α-MEM) (HyClone) supplemented with 10% fetal bovine serum (FBS) (Excell) and 1% penicillin and streptomycin (Beyotime) in a humidified incubator with 5% CO2 at 37° C. For osteoblast induction, cells were cultured in OBM after cells reached 90% confluence. OBM was prepared with α-MEM medium supplemented with 10% FBS, 10 mM β-glycerophosphate, 50 μg/mL α-ascorbic acid, and 0.1 μM dexamethasone, and the medium was changed every 3 days. For the induction of inflammation, lyophilized LPS powder (Sigma, L2630, Escherichia coli O111:B4) was diluted with cell culture medium to 1 mg/mL for storage and further diluted to the working concentration. FK866 (Beyotime, SD7257) was diluted with cell culture medium to 1 nM. EX527 (Beyotime, SC0281), a selective Sirt1 inhibitor, was diluted with cell culture medium to 30 μM. NMN (Sigma, N3501), the NAD+ precursor, was diluted with cell culture medium to 100 μM. SRT 1720 (Beyotime, SC0267), a selective Sirt1 agonist, was diluted with cell culture medium to 5 μM.
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2

Hypoxia-Induced Endothelial Cell Dysfunction

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OGD/R model was carried out as described previously (Guo et al., 2022 (link)). Briefly, HUVECs were cultured in glucose-free and serum-free Minimum Essential Medium (Gibco, Grand Island, NY, United States) within an anaerobic chamber containing 1% O2, 5% CO2, and 94% N2 for 10 h at 37°C. After hypoxia, cells were incubated with full RPMI 1640 Medium without or with PCA at given concentrations for 24 h. When selisistat (EX527) was used to inhibit the activity of Sirtuin 1 (SIRT1), EX527 (10 μM) (Beyotime, Shanghai, China) was added to full RPMI 1640 Medium and incubated 2 h before OGD/R treatment (Deng et al., 2021 (link)).
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3

Melatonin Modulates ER Stress-Induced Apoptosis

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Fetal bovine serum, Dulbecco’s modified Eagle medium (DMEM)/F12 medium, and phosphate-buffered saline (PBS) were purchased from HyClone (Logan, UT, United States). Melatonin (73314) was purchased from Med Chem Express (Princeton, NJ, United States). LPS (ST1470), tunicamycin (TM) (SC0393), 4′,6-diamidino-2-phenylindole (DAPI) (P0131), 0.25% trypsin (C0205), and EX527 were purchased from Beyotime (Shanghai, China). Primary antibodies against SIRT1 (13161-1-AP), Bax (50599–2–Ig), glucose-regulated protein 78 (GRP78) (11587-1-AP), CHOP (15204-1-AP), IRE1α (27528-1-AP), and β-actin (15204-1-p) were purchased from Proteintech (Wuhan, Hubei), as were horseradish peroxidase (HRP)-conjugated secondary antibodies. Phospho-IRE1α (P-IRE1α) (ab124945), Bcl-2 antibodies (ab32124), cleaved caspase-4 (ab22687), and cleaved caspase-10 (ab11475) were purchased from Abcam (Cambridge, United Kingdom), and XBP1S (#40435) and cleaved caspase-3 (Asp175) were purchased from Cell Signaling Technology (Danvers, MA, United States). Cell-counting kit 8 (CCK-8) was purchased from Beyotime.
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4

HUVEC-C Cells Response to Uric Acid

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The human umbilical vein endothelial HUVEC-C cell line (CRL-1730) was purchased from the American Type Culture Collection and maintained in DMEM (Gibco; Thermo Fisher Scientific, Inc.) supplemented with 10% fetal bovine serum (Gibco; Thermo Fisher Scientific, Inc.) and 1% penicillin/streptomycin (Invitrogen; Thermo Fisher Scientific, Inc.). Cells were maintained at 37°C in a humidified atmosphere containing 5% CO2. HUVECs were stimulated with 6, 9 and 12 mg/dl concentrations of UA (cat. no. U2625; Sigma-Aldrich; Merck KGaA) for 24 h at room temperature. Sirtuin 1 (sirt1) expression was inhibited by EX527 (10 µM; Beyotime Institute of Biotechnology) (15 (link)). Untreated cells were used as the control group.
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5

SIRT1 Modulation Impacts N. caninum Propagation

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To investigate the effect of SIRT1 on propagation of N. caninum, caprine EECs were incubated with an activator resveratrol (RSV) (Beijing Solarbio Science & Technology Co., Ltd., Beijing, China) or an inhibitor Ex 527 (Beyotime Biotechnology, Shanghai, China) of SIRT1 for 1 h and then infected with N. caninum tachyzoites at a MOI of 3:1 (parasite:cell) for 48 h. The numbers of N. caninum tachyzoites per parasitophorous vacuole were calculated by using inverted optical microscopy (Olympus Co., Tokyo, Japan), and a total of 100 vacuoles were counted. In addition, the cytotoxicities of RSV and Ex 527 were analyzed using a cell counting kit (CCK-8; Zeta life, California, USA), and both 50 μM RSV and 20 μM Ex 527 had no significant cytotoxicities for caprine EECs (Additional file 2: Fig. S1).
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6

Investigating Protective Effects of Empagliflozin, EX527, and MitoQ on NASH-Induced LO2 Cells

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LO2 cells were obtained from Shanghai Cell Bank of the Chinese Academy of Sciences (Shanghai, China) and cultured in high-glucose dulbecco’s modified eagle medium (DMEM) (Gibco™, Thermo Fisher Scientific, Waltham, MA, USA) medium supplemented with 10% fetal bovine serum (Gibco™, Thermo Fisher Scientific, Waltham, MA, USA) and 1% penicillin–streptomycin antibiotics (Gibco™, Thermo Fisher Scientific, Waltham, MA, USA) in a humidity atmosphere of 5% CO2 at 37 °C. The cells were seeded at an appropriate density on 96-well plates, 24-well plates, 12-well plates, and 6-well plates, and then treated with 0.5 mM palmitic acid (PA; Sigma-Aldrich, St. Louis, MO, USA) for 24 h to mimic a nonalcoholic steatohepatitis model. The liquefied PA was diluted with 5% bovine serum albumin (BSA, Biofroxx, Guangzhou, China) solution gradually and sterilized by ultraviolet light to prepare a PA stock solution required by the study on the basis of a previous study [12 (link)]. Different concentrations of empagliflozin (Empa; 5.5, 11 and 22 μM; BioChemPartner, Shanghai, China), EX527 (10 μM; Beyotime, Shanghai, China), and mitoquinone (mitoQ; 500 nΜ; MedChemExpress, Shanghai, China) were added to investigate the protective effects on PA-induced LO2 cells.
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7

Bergenin Modulates Inflammatory Response

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OVA was purchased from Sangon Biotech Co., Ltd. (Shanghai, China; BC Grade). Aluminum hydroxide was purchased from Sigma-Aldrich (St. Louis, MO, United States). Bergenin was purchased from Aladdin Chemistry (Shanghai, China; >98% purity) for cell experiments and Solarbio (Beijing, China; >98% purity) for animal experiments. EX-527, an Ultrasensitive ECL Chemiluminescence Kit, and IL-1β and IL-6 enzyme-linked immunosorbent assay (ELISA) kits were purchased from Beyotime Biotechnology (Shanghai, China). IL-5 ELISA kit was purchased from NeoBioscience Technology Co, Ltd (Shenzhen, China). Antibodies used in western blotting and immunofluorescence are listed in Table 1.
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8

Molecular mechanisms of mTOR, PARP, and SIRT1 in cell signaling

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Cell culture media and additives were obtained from the HyClone Company (Beijing, China). Antibodies for mTOR (Cat. No. 32028), p-mTOR (Cat. No. 109268), p-S6K1 (Cat. No. 131436), and p-4EBP1 (Cat. No. 75767) were purchased from Abcam (Cambridge, MA, USA). PARP-1 (Cat. No. 9542S) and SIRT1 (Cat. No. 9475 T) antibodies were purchased from Cell Signaling Technology (Shanghai, China). pADPr (PAR) (Cat. No. 56198) and AIF (Cat. No. 9416) antibodies were acquired from Santa Cruz Biotechnology (Beijing, China). The β-ACTIN (Cat. No. 21800) and LaminB1 (Cat. No. 40413) antibodies, in addition to secondary antibodies, were obtained from Signalway Technology (St. Louis, MO, USA). Hoechst/PI and EX527 (a SIRT1 inhibitor) were purchased from Beyotime Biotechnology (Shanghai, China). Rapamycin (an mTOR inhibitor) and 3-Aminobenzamide (3AB, a PARP-1 inhibitor) were obtained from Abmole (Beijing, China). All other reagents were acquired from Sigma-Aldrich (Shanghai, China).
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9

Investigating LPS-Induced Acute Lung Injury in Mice

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The experiment was approved by the Animal Ethics Committee in the Tianjin Nankai Hospital (Approval No. NKYY-DWLL-2019-012, Tianjin, China). Six-week-old (20 ∼ 25 g) male C57BL/6 mice were supplied by Experimental Animal Technical Co. Ltd. (Beijing, China; animal license number: SYXK (Jing)2017-0024) and maintained in a temperature-controlled facility (humidity: 40%–60%, temperature: 22–25 °C) with a 12-h light/dark cycle. The animals were randomly assigned into seven groups (n = 8): control, LPS, LPS + NMN, NMN, LPS + NMN + EX-527, LPS + EX-527, and EX-527. To establish the endotoxin-related ALI model, lipopolysaccharide (15 mg/kg, Sigma, USA) was injected intraperitoneally as reported previously (Shi et al. 2021 (link)). Mice were pretreated intraperitoneally with NMN (500 mg/kg, Sigma, USA) and/or SIRT1 inhibitor EX-527 (5 mg/kg, Beyotime, China) 1 h before LPS injection as previously described (Caton et al. 2011 (link); Xu et al. 2016 (link)). Additionally, an equal volume of sterile saline served as a vehicle control. The mice were euthanized under deep anaesthesia via cervical dislocation after 12 h, and care was taken to reduce animal suffering. Serum was obtained by eyeball extirpation with centrifugation at 3000 rpm for 10 min for further analysis. Lung tissues were fixed in 4% paraformaldehyde or stored at −80 °C for further analyses.
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10

Investigating MRGD and SIRT1 Inhibition

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To investigate the effect of MRGD on SIRT1, we added the inhibitor EX527 to the MRGD intervention group. The cells were incubated in 10 μM EX527 (SC0281-10mM, Beyotime, China) and MRGD (0.25 mg/mL) for 12 h.
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