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13 protocols using minimal essential medium eagle

1

Aerosolized Influenza Virus Detection

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About 0.05 mL of allantoic fluid of fertilized hen’s eggs, in which influenza A/Aichi/2/68 (H3N2) virus was propagated, was atomized inside the patient hood, simulating bioparticles of a patient’s cough using an electric compressor-type nebulizer, which generated mists of 1–10 µm diameter particles (NE-C16; Omron, Kyoto, Japan). Airborne particles were collected from inside and outside of the patient hood using an air sampler and a gelatin membrane filter (MD8 AirScan Sartorius AG, Göttingen, Germany) for virus detection and quantitation, as described previously (11 (link)). A total of 320 L of air was passed through the membrane at a flow rate of 80 L/min (i.e., 4 minutes sampling time). The gel membrane filter was then dissolved in 10 mL of culture medium, Minimal Essential Medium Eagle (Sigma-Aldrich, UK), (37 °C) then subjected to a conventional plaque assay using Madin-Darby canine kidney (MDCK) cells (12 (link)).
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2

SH-SY5Y Neuroblastoma Cell Culture

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Human neuroblastoma cell line, SH-SY5Y (ATCC CRL-2266), was grown and maintained in a 50:50 mix of Minimal Essential Medium Eagle (Sigma) and Nutrient Mixture F-12 Ham (Sigma), supplemented with 10 % foetal bovine serum (ThermoScientific), 1 % penicillin/streptomycin (100 U/ml, 100 mg/ml; Sigma), 1 % (v/v) 200 mM L-glutamine (Sigma), and 1 % (v/v) 100 mM sodium pyruvate (Sigma). Cells were incubated at 37 °C with 5 % CO2.
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3

SH-SY5Y Neuroblastoma Cell Line Drug Treatments

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SH-SY5Y neuroblastoma cell line (ATCC number CRL-2266) was maintained in a 1:1 mix of Minimal Essential Medium Eagle (Sigma) and Nutrient Mixture F-12 Ham (Sigma), supplemented with 10% foetal bovine serum (Sigma), 1% penicillin/streptomycin (100 U/ml, 100 mg/ml; Sigma), 1% (v/v) 200 mM l-glutamine (Sigma), and 1% (v/v) 100 mM sodium pyruvate (Sigma). Cells were incubated at 37 °C with 5% CO2.
Stock solutions were made for amphetamine, cocaine hydrochloride, lithium chloride, and valproic acid sodium salt (Sigma) using sterile filtered dH2O, and diluted as appropriate in SH-SY5Y media. Cells were cultivated for 24 h, before a 1 h incubation with either: vehicle control (sterile filtered dH2O), 10 μM amphetamine (Jones and Kauer, 1999 , Shyu et al., 2004 (link)), 10 μM cocaine (Warburton et al., 2015c (link)), 1 mM lithium (Hing et al., 2012 (link), Roberts et al., 2007 ) or 5 mM sodium valproate (Pan et al., 2005 (link), Phiel et al., 2001 (link), Zhang et al., 2003 ). For each drug treatment, n = 4. Cells were harvested directly after the 1 h drug treatment for RNA extraction.
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4

Establishing SwSCV-1-infected Boa Kidney Cells

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The study made use of previously described cultured Boa constrictor kidney cells, I/1Ki, [34 (link)] and persistently SwSCV-1- infected I/1Ki cells, I/1Ki-Δ [17 (link)]. The cells were maintained in Minimal Essential Medium Eagle (Sigma-Aldrich, St.Louis, MO, USA) supplemented with 10% fetal bovine serum (ThermoFisher Scientific, Waltham, MA, USA), 200 mM L-glutamine (Sigma-Aldrich, St. Louis, MO, USA), 100 µg/mL of streptomycin (Sigma-Aldrich, St. Louis, MO, USA), and 100 U/mL of penicillin (Sigma-Aldrich, St. Louis, MO, USA) in an incubator at 30 °C with 5% CO2.
To establish another persistently SwSCV-1-infected I/1Ki cell line, designated I/1Ki-1.2×Δ, we transfected I/1Ki cells with a plasmid containing 1.2 copies of the SwSCV-1 genome (described below) and maintained the cells as described above and earlier [17 (link)].
To study infectious particle formation of the SwSCV-1-infected cell lines, we conducted superinfection studies with HISV-1 [35 (link)], earlier demonstrated to be an efficient helper virus for SwSCV-1 [17 (link)]. The superinfection studies and detection followed the protocol described [17 (link)]. For the infection, we used 600 copies of HISV-1 S segment RNA per cell, which corresponds roughly to a multiplicity of infection (MOI) of 10.
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5

SARS-CoV-2 Protein Expression in Vero E6 Cells

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The study made use of the following plasmids for recombinant expression of three SARS-CoV-2 proteins and receptor binding domain (RBD; or R) of the spike (S) protein: S protein with His-tag (S-pCAGGS; described in2 (link)), RBD with His-tag (RBD-pCAGGS; described in Amanat et al.2 (link)), membrane (M) protein with HA-tag (M-pEBB; HA-Tag) and nucleoprotein (NP; or N) with His-tag (NP-pCAGGS; described in Rusanen et al.3 (link)) (see also key resources table). For M-pEBB, M gene, according to hCoV-19/Finland/1/2020 (GenBank accession MT020781) sequence, was synthesized and cloned into pEBB-N-HA mammalian expression vector by GeneArt (Thermo Fisher Scientific).
Vero E6, African green monkey kidney cell line (ATCC; mycoplasma tested), were grown in Minimal Essential Medium Eagle (SIGMA, US) supplemented with 10% fetal bovine serum (Gibco, US), 2 mM L-glutamine (Gibco), 100 IU/mL penicillin and 100 μg/mL streptomycin (Gibco/Sigma). Vero E6 cells were cultured to a 90–95% confluence in T-75 cell culture flasks and detached using 0.25% Trypsin-EDTA (Gibco).
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6

Human Neuroblastoma Cell Culture and Drug Response

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Human neuroblastoma cell line, SH-SY5Y(ATCC CRL-2266), was grown and maintained in a 1:1 mix of Minimal Essential Medium Eagle (Sigma) and Nutrient Mixture F-12 Ham (Sigma), supplemented with 10% foetal bovine serum (ThermoScientific), 100 U/ml penicillin/100 mg/ml streptomycin (Sigma), 1% (v/v) 200 mM l-glutamine (Sigma), and 1% (v/v) 100 mM sodium pyruvate (Sigma). Cells were incubated at 37 °C with 5% CO2.
Cells were plated out into 24-well plates for reporter gene transfections or 6-well plates to assay endogenous gene expression. For drug challenge, 10 μM cocaine, 1 mM lithium, or vehicle alone (sterile water) were diluted in appropriate volumes of cell culture media and added to the SH-SY5Y cells for 1 h, removed and fresh media added. For luciferase assays, drug treatments were performed 4-hour post-tranfection.
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7

Culturing SH-SY5Y Neuroblastoma Cell Line

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The established neuroblastoma cell line SH-SY5Y (ATCC: CRL-2266) was derived from cell line SK-N-SH, which was originally extracted from bone marrow metastasis of 4-year-old female with neuroblastoma. SH-SY5Y cells were incubated at 37 °C and 5% CO2 in a 1-to-1 mix of Minimal Essential Medium Eagle (M2279, Sigma-Aldrich/Merck, Darmstadt, Germany) and Nutrient Mixture F-12 Ham (N4888, Sigma-Aldrich), supplemented with 10% (v/v) FBS (10500-064, Gibco/ThermoFisher Scientific, Waltham, Massachusetts, U.S.), 1% (v/v) penicillin–streptomycin (P0781, Sigma-Aldrich), 1% (v/v) L-glutamine (25030-149, Gibco), and 1% (v/v) 100nM sodium pyruvate (S8636, Sigma-Aldrich).
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8

Sperm Processing for Functional Assays

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Donated human spermatozoa with normal semen characteristics (concentration, motility; WHO 2010) from healthy volunteers with no known fertility problems were used in this study. Samples were obtained by masturbation after ≥ 48 h of sexual abstinence, liquefied for 30 min at 37°C, and processed using density gradient centrifugation, to separate cells using 40/80% Percoll (Sigma Aldrich, UK) fractions. Every experiment has been performed on pooled spermatozoa from ≥ 3 donors each.
For experiments in non-capacitating conditions, we used a buffer system slightly modified from [23 (link)] using Minimal Essential Medium Eagle (Sigma), supplemented with HEPES (1 M solution, Gibco), sodium lactate (DL-solution, Sigma), sodium pyruvate (100 mM solution, Gibco) and bovine serum albumin (7.5% solution, Sigma).
For experiments in capacitating conditions, we used a buffer system slightly modified from the HTF from [63 (link)] to a final composition of 97.8 mM NaCl, 4.69 mM KCl, 0.2 mM MgSO4, 0.37 mM KH2PO4, 2.04 mM CaCl2, 0.33 mM Na-pyruvate, 12.4 mM Na-lactate, 2.78 mM glucose, 21 mM HEPES, 25 mM NaHCO3 and 3 mg/mL BSA. All buffer components were supplied by Sigma-Aldrich unless otherwise stated and all buffer systems were adjusted to pH 7.4.
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9

Cell Culture Conditions for Lung Cancer Cell Lines

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Beas2B and A549 cells (ATCC) were grown in Dulbecco's Modified Eagle's Medium (DMEM, Sigma-Aldrich), HeLa cells (ATCC) were grown in Minimal Essential Medium Eagle (Sigma-Aldrich), and H1299 and H1975 cells (ATCC) were grown in Roswell Park Memorial Institute-1640 Medium (Sigma-Aldrich). All media were supplemented with 10% FBS, 4 mM L-glutamine, and 1% Penicillin/Streptomycin, and cells were incubated at 37°C in a 5% CO2 incubator. Please note that our strain of Beas2B cells does not cause tumors in nude mice [60 (link)].
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10

Cell Culture Reagent Procurement

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Minimal essential medium eagle (MEME) was purchased from Sigma-Aldrich (Munich, Germany). Other cell culture reagents were obtained from Biochrom (Berlin, Germany) or life Technologies (Darmstadt, Germany).
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