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9 protocols using rosettesep nk cell enrichment kit

1

NK Cell Functional Assay with Immune Complexes

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Human NK cells were isolated from buffy coats using RosetteSep NK cell enrichment kit (StemCell Technologies) and Ficoll separation. The isolated NK cells were rested overnight at 1.5 × 106 cells/mL in IL-15 at 37°C. ELISA plates were coated with antigen at 300 ng/well and incubated for 2 hours at 37°C. Plates were blocked with 5% BSA in PBS overnight at 4°C. The next day, 100 μL of antibodies, at a concentration of 5 μg/mL, were added to the plates. Plates were incubated for 2 hours at 37°C to form immune complexes. After the incubation, NK cells were added to the plates at 5 × 104 cells/well in R10 supplemented with anti-CD107a PE-Cy5, Brefeldin A (MilliporeSigma, B7651-5MG), and GolgiStop (BD Biosciences, 555802). Plates were incubated for 5 hours at 37°C. Following the incubation, NK cells were stained for the surface markers with anti-CD56 PE-Cy7, anti-CD16 APC-Cy7, and anti-CD3 Pacific Blue (BD Biosciences, 557747, 557758, 558124). NK cells were fixed and permeabilized with Fix&Perm cell permeabilization kit (Invitrogen, Thermo Fisher Scientific). Cells were incubated with anti–MIP-1β PE and anti–IFN-γ FITC (BD Biosciences, 550078, 340449) to stain for intracellular markers. Cells were acquired on an Intellicyt iQue.
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2

Isolation and Culture of Immune Cells for In Vitro Assays

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THP-1 cells, a human leukemia monocyte cell line, were maintained in RPMI-1640 Medium (Sigma-Aldrich) with 10% fetal bovine serum (FBS, Sigma-Aldrich), 1% L-glutamine (Corning), 2% of 5000 IU/mL of Penicillin and 5,000 μg/ml of Streptomycin Solution (Pen-Strep, Corning), 1% of 1 M HEPES (Corning), and 5 mM 2-Mercaptoethanol (Gibco). Cells were incubated at 37 °C with 5% CO2.
Primary neutrophils for antibody-dependent neutrophil phagocytosis (ADNP) assays were isolated from whole blood from healthy donors using Ammonium-Chloride-Potassium (ACK) Lysing Buffer (Quality Biological) followed by centrifugation and multiple wash steps prior to assay usage.
Primary natural killer cells for the antibody-dependent natural killer activation (ADNKA) assays were isolated from buffy coats from healthy donors using the RosetteSep NK cell enrichment kit (STEMCELL Technologies). Cells were incubated overnight at 37 °C with 5% CO2 in RPMI-1640 Medium (Sigma-Aldrich) with 10% FBS (Sigma-Aldrich), 1% L-glutamine (Corning), 2% of Pen-Strep (Corning), and 1% of 1 M HEPES (Corning) prior to assay usage.
Human embryonic kidney (HEK) 293 T cells expressing ACE2 for neutralization assays were maintained in Dulbecco’s Modified Eagle’s Medium (DMEM, Corning) with 10% FBS (VWR) and 1% Pen-Strep (Corning) and incubated in 37 °C with 5% CO2.
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3

Antibody-dependent NK cell activation

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To determine Antibody-dependent NK cell activation, MaxiSporp ELISA plates (Thermo Fisher) were coated with respective antigen for 2h at RT and then blocked with 5% BSA (Sigma-Aldrich). 50 μl 1:50 diluted plasma sample or monoclonal Abs was added to the wells and incubated overnight at 4°C. NK cells were isolated from buffy coats from healthy donors using the RosetteSep NK cell enrichment kit (STEMCELL Technologies, MA, USA) and stimulated with rhIL-15 (1ng/ml, STEMCELL Technologies) at 37°C overnight. NK cells were added to the washed ELISA plate and incubated together with anti-human CD107a (BD, 1:40, clone: H4A3), brefeldin A (Sigma-Aldrich, MO, USA), and monensin (BD) for 5 hours at 37°C. Next, cells were surface stained for CD56 (BD, 1:200, clone: B159), CD16 (BD, 1:200, clone: 3G8), and CD3 (BD, 1:800, UCHT1). After fixation and permeabilization with FIX & PERM Cell Permeabilization Kit (Thermo Fisher), cells were stained for intracellular markers MIP1β (BD, 1:50, clone: D21–1351) and IFNγ (BD, 1:17, clone: B27). NK cells were defined as CD3-CD16+CD56+ and frequencies of degranulated (CD107a+), INFγ+ and MIP1β+ NK cells determined on an iQue analyzer (Intellicyt)(49 (link)).
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4

NK Cell Degranulation and Cytokine Assay

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Human NK cells were isolated from buffy coats using RosetteSep NK cell enrichment kit (STEMCELL Technologies) and Ficoll separation. The isolated NK cells were rested overnight at 1.5 × 106 cells/mL in IL-15 at 37°C. ELISA plates were coated with antigen at 300 ng/well and incubated for 2 hours at 37°C. Plates were blocked with 5% BSA in PBS overnight at 4°C. The next day, 100 μL of antibodies at a concentration of 5, 1 or 0.2 μg/mL, were added to the plates. Plates were incubated for 2 hours at 37°C to form immune complexes. After the incubation, NK cells were added to the plates at 5 × 104 cells/well in R10 supplemented with anti-CD107a PE-Cy5, BFA and GolgiStop (BD Biosciences). Plates were incubated for 5 hours at 37°C. Following the incubation, NK cells were stained for surface markers with anti-CD56 PE-Cy7, anti-CD16 APC-Cy7 and anti-CD3 Pacific Blue (BD Biosciences). NK cells were fixed and permeabilized with Fix & Perm cell permeabilization kit (Invitrogen™). Cells were incubated with anti-MIP1β PE and anti-IFNγ FITC (BD Biosciences) to stain for intracellular markers. Cells were acquired on an Intellicyt iQue Screener.
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5

NK cell activation by immune complexes

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ELISA plates were coated with 100ul/well of pertussis, influenza A, and RSV antigen at 2 µg/mL each and incubated 2 h at 37 °C. Plates were washed three times with PBS and blocked with 5% BSA/PBS overnight at 4 °C. NK cells were isolated from Buffy coats from 3 healthy adult donors (not cord or infant blood from the study) using RosetteSep NK cell enrichment kit (StemCell Technologies) and rested overnight in the presence of IL-15. The following day, samples were diluted 1:25 and 50 µL/well diluted sample was added to ELISA plates after washing, incubating at 37 °C for 2 h. A CD107 PE-Cy5/BFA/GolgiStop (BD Biosciences, 555802) cocktail was prepared and added directly to NK cells before adding 200 µL/well NK cells at a concentration of 2.5 × 105 cells/mL. Cells and plate-bound immune complexes were incubated for 5 h at 37 °C. After incubation and washing, NK cells were stained for surface markers, CD56 PE-Cy7, CD16 APC-Cy7, and CD3 Pacific Blue (BD Biosciences, 557747, 557758, 558124) in V-bottom plates. Cells were subsequently washed and incubated with PermA for 15 min followed by intracellular staining with fluorescently conjugated MIP1β PE and IFNγ FITC (BD Biosciences, 550078, 340449). NK cell activation and degranulation markers were measured by flow cytometry with the Intellicyt iQue.
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6

Assessing Antibody-Dependent NK Cell Activation

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To determine antibody-dependent NK cell activation, enzyme-linked immunosorbent assay (ELISA) plates (Thermo Fisher) were coated with nonbiotinylated antigen and then blocked. One hundred microliters of a 1:50 sample dilution was added to each well. NK cells were isolated from unidentified buffy coats from healthy donors using the RosetteSep NK cell enrichment kit (STEMCELL Technologies, MA, USA) and stimulated with human recombinant IL-15 (rhIL-15) (1 ng/ml; STEMCELL Technologies) at 37°C overnight. NK cells were added to the ELISA plate and incubated together with anti-CD107a (BD, clone H4A3), brefeldin A (Sigma-Aldrich, MO, USA), and monensin (BD) for 5 h at 37°C. Next, cells were surface stained for CD56 (BD, clone B159), CD16 (BD, clone 3G8), and CD3 (BD, UCHT1). After fixation and permeabilization with FIX & PERM cell permeabilization kit (Thermo Fisher), cells were stained for intracellular markers MIP-1β (BD, clone D21-1351) and IFN-γ (BD, clone B27). NK cells were defined as CD3 CD16+ CD56+ and frequencies of degranulated (CD107a+), gamma interferon-positive (IFN-γ+), and MIP1β+ NK cells determined by flow cytometry on a LSR Fortessa (BD) (48 (link)).
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7

Antibody-Dependent NK Cell Activation

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ELISA plates (NUNC, Thermo Fisher) were coated with HA antigens (H1 A/California/07/2009 and H3 A/Texas/50/2012), washed to remove unbound antigen, and blocked with 5% bovine serum albumin (Sigma) in PBS. Primary human NK cells were isolated from fresh buffy coats using the RosetteSep NK cell enrichment kit (StemCell) and rested overnight at 37C with 1 ng/ml IL-15 (StemCell). 1:25 diluted serum samples were added to the washed, HA-coated plates and incubated for 2 hours at 37C. Immediately prior to use, brefeldin A (Sigma), GolgiStop (BD), and fluorescent anti-CD107a (BD) were added to primary NK cells. Immune complexed plates were washed, and NK cells were added for 5 hours at 37C. After incubation, NK cells were removed and stained with fluorescent antibodies for cell surface markers CD3, CD56, and CD16 (BD). NK cells were fixed and permeabilized using Fixation & Permeabilization Media A & B (BD). Permeabilized NK cells were stained for intracellular makers MIP-1β and IFN-ɣ (BD). NK cells were quantified on the iQue Screener Plus using Forecyt software (Intellicyt). NK cells were defined as CD3 negative, CD16 positive. Each sample was assayed on two buffy coat donors.
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8

Quantifying NK Cell Activation

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ELISA plates were coated with antigen at 300 ng/well and incubated for 2 h at 37 ˚C. Plates were blocked with 5% BSA in PBS overnight at 4 ˚C. The next day, 100 μL of diluted sample were added to the plates. Plates were incubated for 2 h at 37 ˚C to form immune complexes. During the incubation, human NK cells were isolated from buffy coats using RosetteSep NK cell enrichment kit (StemCell Technologies #15065) and Ficoll separation. After the incubation, NK cells were added to the plates at 5 × 104 cells/well in R10 supplemented with anti-CD107a PE-Cy5 (1:80 dilution), GolgiStop and Brefeldin A (BD Biosciences,#554724, #555802, Sigma #B7651). Plates were incubated for 5 h at 37˚C. Following the incubation, NK cells were stained for surface markers with anti-CD56 PE-Cy7, anti-CD16 APC-Cy7 and anti-CD3 Pacific Blue (1:200 dilution) (BD Biosciences, #557747, #557758, #558124). NK cells were fixed and permeabilized with Fix&Perm cell permeabilization kit (Invitrogen). Cells were incubated with anti-MIP1β PE (1:200 dilution) and anti-IFNγ FITC (1:80 dilution) (BD Biosciences, #550078, #340449) to stain for intracellular markers. Cells were acquired on a Stratedigm 1300EXi cytometer.
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9

NK-mediated Killing of HIV-infected Cells

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CEM-NKr CCR5+ cells (49 (link)– (link)51 (link)) (NIH AIDS reagents program) were infected with vesicular stomatitis virus glycoprotein (VSV-g)-pseudotyped HIV-1 (strain JRCSF, 0.5 IU/cell). Infection was facilitated with Polybrene (4 μg/ml) and spinoculation (800 × g for 45 min at room temperature [RT]). Cells were then incubated for 2 days at 37°C and media (RPMI supplemented with 10% fetal bovine serum [FBS], l-glutamine, and penicillin/streptomycin [Pen/Strep]) exchanged once 6 h after infection. NK cells were isolated from buffy coats from healthy donors using the RosetteSep NK cell enrichment kit (STEMCELL Technologies) and stimulated with rhIL-15 (1 ng/ml; STEMCELL Technologies) at 37°C overnight. Infected CEM-NKr CCR5+ cells were labeled with CellTrace far red cell proliferation kit (Thermo Fisher) before 1:50 diluted plasma sample were added together with the NK cells. After 4 h of incubation at 37°C, cells were stained with LIVE/DEAD Fixable Blue Dead Cell Stain kit (Thermo Fisher). Cells were then fixed and permeabilized with Fixation/Permeabilization Solution kit (BD) and stained for intracellular HIV-p24 (Beckman Coulter, CA, USA; clone KC57). Cell killing was calculated as frequency of viable, p24+ CEM-NKr CCR5+ cells compared to a negative control without antibodies (phosphate-buffered saline [PBS]).
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