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6 protocols using ib24001

1

Western Blot Analysis of SNpc Proteins

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Samples of the SNpc were homogenized, lysed with 1 × RIPA buffer (MB-030–0050, ROCKLAND; #320103, bio masher II, Nippi), and centrifuged at 13,000 × g for 10 min to obtain the soluble protein fraction. Soluble proteins were separated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis (SDS-PAGE, #4561083, Bio-Rad) at 25 μg per gel lane and transferred to polyvinylidene difluoride membranes (IB24001, Thermo Fisher). The membranes were blocked with 3% bovine serum albumin in 0.1%Tris-buffered saline (20 mM Tris–HCl [pH 7.5] and 150 mM NaCl) supplemented with 0.1% Tween-20 (TBST) at RT for 1 h and then incubated at 4°C overnight in the same blocking solution containing rabbit anti-TH (1:1,000, P40101-150, Pel-Freez), rabbit anti-iNOS/NOS Type II (1:1,000, #610332, BD Biosciences), rabbit anti-β-actin (1:1,000, ab8227, Abcam), and chicken anti-GFAP (AB5541, Millipore). Membranes were washed with 0.1% TBST and then incubated at RT for 2 h with anti-rabbit IgG-peroxidase (1:2000, NIF824, Amersham) and HRP-conjugated rabbit anti-chicken IgG (1:2,000, AP162P, Millipore) in TBST containing 5% skim milk power. Antigen–antibody complexes were visualized using Pierce ECL western blotting substrate (#1705061, Bio-Rad).
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2

Protein Expression Analysis in Heart Tissue

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The heart tissues and H9 c2 cells in each group were added with RIPA Lysis Buffer (Beyotime) and homogenised on ice. After centrifugation, the supernatant was taken and denatured by protein-loading buffer. After being electrophoresed, the protein was transferred to the nitrocellulose membrane (IB24001, Thermo Fisher Scientific, Shanghai, China), then blocked with skim milk powder, and incubated with primary antibodies (anti-SOD1 (Bioss), anti-SOD2 (Bioss), anti-Calcipressin 1/DSCR 1 (Bioss), anti-RhoA (Bioss), anti-Calpain 2 (Bioss), anti-Caspase-3 (Bioss), anti-phospho-NFKB p65 (Ser281) (Bioss), and anti-Bcl-2 (Bioss)) overnight. Next day, the corresponding secondary antibody was used for continuous incubation, the images were collected and processed after exposure to enhanced chemiluminescence (ECL), and gapdh/β-actinwas used as an internal control. The protein expression level was analysed with ECL-plus reagent (GE Healthcare, Shanghai, China).
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3

Western Blot Analysis of Hepatic Proteins

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Protein extracts were prepared from cells using the RIPA buffer (786-489, G-Biosciences, MO, USA) supplemented with 1x protease inhibitor cocktail (78429, Thermo, MA, USA) and 1x phosphatase inhibitor cocktail (78420, Thermo, MA, USA). Lysates (20 μg of protein) were loaded on 4–20% gradient gels (3450033, Bio-Rad Laboratories, CA, USA) and transferred to polyvinylidene fluoride membranes (IB24001, Thermo, MA, USA) using the iBlot 2 Dry Blotting System (Thermo, MA, USA). The band intensity was quantified using Image J [26 (link)]. The following antibodies were used: Gapdh (ab9485, Abcam, Cambridge, UK), Hnf1α (ab272693, Abcam, Cambridge, UK), Hnf4α (PP-H1415-0C, R&D system, MN, USA), Prox1 (ab199359, Abcam, Cambridge, UK), Goat Anti-Rabbit IgG H&L (HRP) (ab97051, Abcam, Cambridge, UK), and Goat Anti-Mouse IgG H&L (HRP) (ab205719, Abcam, Cambridge, UK).
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4

Western Blot Analysis of Protein Fractions

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The protein concentrations of the cellular fractions were measured using colorimetric RC DC assay kit (#5000122, Bio-Rad). 15 μg of protein per sample (except for mitochondria fractions, that were too dilute to take 15 μg, from which maximum volume of sample was run) was run on a Bis-Tris 4–12% gel (NP0321, NuPage, Invitrogen, MA) with MOPS Buffer (200V, 45 min) and transferred to a 0.2 micron PVDF membrane (IB24001, Invitrogen) with iBlot2 (Invitrogen). Immediately after the transfer the blot was stained for total proteins (Total Stain Q, AC2225, Azure Biosystems), dried, and imaged with a Sapphire Biomolecular Imager (488 nm laser, Azure Biosystems). After imaging the total protein stain the membranes were re-hydrated with methanol, washed with distilled water followed by PBS, and blocked with blocking buffer (cat# MB070, Rockland, PA) for 1 h at room temperature (RT) and then probed with primary antibodies at 4°C overnight in blocking buffer. The following day the blots were washed and probed with secondary antibodies. The blots were scanned with Odyssey scanner (LI-COR Biosciences, Lincoln, NE). The optical density of each protein band was normalized to the optical density of the total proteins of the corresponding sample lane. Optical densities were measure using ImageJ (version 1.53f, imagej.nih.gov). All the used antibodies are listed in Table 2.
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5

Western Blot Analysis of Tau Proteins

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Equal soluble protein (2 μg/lane) and a proportional amount of the corresponding insoluble sample were loaded into a 4–12% Bis-Tris Gel (Invitrogen WG1402BOX) and separated in MES buffer (Invitrogen NP0002). Protein was blotted by the iBlot2 device and compatible PVDF stacks (Invitrogen IB24001). Membranes were fixed in 4% PFA (Electron Microscopy Sciences) in PBS for 15 min at RT. Membranes were blocked in blocking buffer 10% donkey serum and 5% BSA (Jackson Immunoresearch) in PBS for 1 h RT. Primary antibodies were diluted in blocking buffer 1:1000 and incubated overnight at 4 °C, rocking (Tau HT7 Thermo MN1000, Histone H3 4499S Cell Signaling Technology, 3R Tau 05-803 EMDMillipore, 4R Tau 05-804 EMDMillipore). Secondary antibody (peroxidase-Donkey anti-mouse 715-035-150, peroxidase-Donkey anti-rabbit 711-033-152, Jackson Immunoresearch) was diluted in blocking buffer (1:20,000) and incubated for 1 h RT rocking. Bands were detected by ECL with Supersignal Femto (Thermo 34094) on AzureBiosystems Azure500 chemi detection.
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6

Western Blot Analysis of HIF-1α and mTOR

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For analysis of protein levels, cultured cells were rinsed twice with ice-cold PBS and then lysed with ice-cold CelLytic™ MT Cell Lysis Reagent (C2978, Sigma-Aldrich, UK). Cell lysates were centrifuged at 14, 000 g for 10 min at 4°C, the supernatant was transferred to fresh tubes and Pierce TM BCA Protein Assay Kit (23225, Thermo Fisher Scientific, UK) used to determine the protein concentration in each sample. Then the equal protein was mixed with 4x SDS sample buffer, boiled for 10 min at 90°C, and resolved using 4% to 20% NuPAGE gels (XV04200PK20, Invitrogen, UK). After electrophoresis, the proteins were transferred to PVDF membranes (IB24001, Invitrogen, UK) by electrophoretic transfer. The membranes were blocked with 5% skimmed milk for 2 hours, rinsed, and incubated overnight at 4°C with the following primary antibodies: Anti-HIF-1 alpha (ab2185; Abcam, UK; 1: 1000) and mTOR (7C10) Rabbit mAb (2983; Cell Signaling Technology, UK; 1:1000). Excess antibody was then removed by washing the membrane in PBS/ 0.1% Tween 20, and the membranes were incubated for 2 hours with horseradish peroxidase-conjugated secondary antibodies (A0545, Abcam, UK; 1:2000). Following further washes in PBS/ 0.1% Tween 20, the signals were developed with ECL reagent (GERPN2209, Sigma, UK) and captured by an electronic imaging system (Konica Minolta).
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