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3 protocols using igg2aκ isotype control

1

Comprehensive Immune Profiling of Tumor Samples

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Samples were obtained from blood, spleen, or tumors, as indicated. Tumor samples were weighed after harvest and digested/dissociated, and total cells were counted. Excess surface marker antibodies were mixed with cells and incubated at 4°C for 30 min. After treatment with the Cyto-Fast™ Fix/Perm Buffer Set (Biolegend 426803) or Foxp3/Transcription Factor Staining Buffer Set (Invitrogen 00-5523-00), intracellular markers or Nucleoprotein were stained with the corresponding antibodies. The panel included the following reagents: Zombie NIR™ Fixable Viability Kit, anti-CD45 (Biolegend 103128), anti-CD3 (Biolegend 100203) anti-CD4 (Biolegend 100539), anti-CD8a (Biolegend 100711), anti-CD100 (BD 745346), IgG2a,κ Isotype Control (BD 563236), anti-CD11B (Biolegend 101255), anti-F4/80 (Biolegend 123135), anti-CD11C (Biolegend 117317), anti-CD86 (Biolegend 105037), and anti-CD206 (Biolegend 141706), anti-PD-1 (Biolegend 135227), anti-LAG-3 (Biolegend 125209), anti-TIM-3 (Biolegend 119717), anti-TIGIT (Biolegend 142111).
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2

Multiparametric Flow Cytometry of Tumour Samples

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Tumour samples were digested using Tumour Dissociation Kit human (Miltenyi Biotec). Labelled cells were analysed by BD LSRFortessa X‐20 cell analyser (BD Biosciences) and FlowJo v10 software (Tree Star). Anti‐CD20 antibodies and IgG2bκ isotype control were purchased from BD Biosciences or BioLegend. Anti‐CD19 antibodies, IgG2aκ isotype control and IgG1κ isotype control were obtained from BD Biosciences. Anti‐CD79b antibodies were purchased from Thermo Fisher Scientific or Miltenyi Biotec. Anti‐CD243 (anti‐MDR1) antibodies were obtained from BioLegend. IgG1 isotype control antibodies were purchased from Miltenyi Biotec. Mean fluorescence intensity (MFI) ratio was calculated by dividing the MFI value of stained cells by the MFI value of the respective isotype control‐stained cells.
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3

Comprehensive Immune Cell Profiling

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Peripheral blood mononuclear cells were stained with fluorochrome‐conjugated antibodies: CD19 (clone: 4G7), CD3 (clone: HIT3A), CD4 (clone: A161A1), CD8 (clone: SK1), CD14 (clone: 63D3), CD16 (clone: 3G8), CD56 (clone: 5.1H11), HLA‐DR (clone: L243), CD20 (clone: 2H7), CD24 (clone: ML5), CD27 (clone: M‐T271), CD38 (clone: HB‐7), IgD (clone: IA6‐2), CD11c (clone: 3.9), IL‐6 (clone: MQ2‐13A5) and HIF‐1α (clone: 546–16), IgG2aκ isotype control (clone: RMG2b‐1) were obtained from BD Pharmagen (San Diego, CA, USA) or Biolegend (San Diego, CA, USA). Live/dead cells were distinguished using Zombie NIR Fixable Viability kit (Biolegend). Data were collected by a flow cytometer (Fortessa X20, BD) and analysed by the FlowJo software (BD).
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