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7 protocols using methanol for hplc

1

Saponin Extraction and Ginsenoside Analysis

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Methanol and brutanol were obtained from Duksan Pure Chemicals Co. Ltd., Ansan, South Korea, for use in extracting saponin. Methanol for HPLC was obtained from Sigma-Aldrich, St Louis, MO, USA. Among the various ginsenoide types, the RG, Rb1 and Rc (Ace EMzyme Co., Anseong-si, Korea) were obtained as standards for ginsenoside HPLC analysis. Additionally, carbazole was obtained from Samchun Pure Chemicals Co., Seoul, Korea, for use in determining acidic polysaccharide content.
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2

Analysis of Polyphenol Standards

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Microfiltered and ultrapure water was used for the preparation of the solutions via the Merck Millipore ZRQS0P3FR Direct system. All solvents and reagents used in the experiments were of a high degree of purity. Ethanol ≥99.9% ACS for analysis, methanol for HPLC, anhydrous 95% n-hexane, chloroform for chromatography, 1-butanol ACS reagent ≥99.5%, hydrochloric acid 37% RPE for analysis, potassium bicarbonate, anhydrous sodium carbonate for analysis, gallic acid ACS for analysis and Sudan IV reagent were purchased from Sigma-Aldrich Chemical Company (Milan, Italy). Folin-Ciocălteu reagent and hypergrade acetonitrile for LC-MS were purchased from Merck Millipore GmbH (Milan, Italy). 2,2-diphenyl-1-picrylhydrazyl (DPPH·) was obtained from Alfa Aesar (from Thermo Fisher Scientific companies in Rodano, Milan, Italy). Polyphenol standards (malvidin-3-O-glucoside, naringin, catechin, quercetin, gallic acid, vanillic acid, caffeic acid, ferulic acid), amino acid standard mixture, methanol, acetic acid, gallic acid, were purchased from Merck (Darmstadt, Germany); 2-propanol and acetonitrile (ACN) from Honeywell (Charlotte, USA), formic acid by J.T. Baker (Rodano, Italy).
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3

Quantification of Caffeine and Chlorogenic Acid in Coffee

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The following standards and chemicals were used: chlorogenic acid (Dr Ehrenstorfer GmbH, Augsburg, Germany), caffeine (Sigma-Aldrich, Prague, Czech Republic), methanol for HPLC (Sigma-Aldrich, Prague, Czech Republic), and acetic acid 100% for HPLC (Sigma-Aldrich, Prague, Czech Republic).
The sample of ground coffee (7 g) was added into a beaker (250 mL), and the caffeine and CQA were coextracted for 5 min with 100 mL of hot (90 °C) demineralised water. Then the sample was filtered through the paper filter. Coffee extracts were analysed by the HPLC method described in Yoe-Ray et al. [21 (link)] with the following modifications. caffeine and CQA were separated on the column Kinetex, Biphenyl, 150 × 4.6 mm, particle size 5 µm (Phenomenex, Torrance, CA, USA) with the guard column (SecurityGuard ULTRA Cartridge, UHPLC Biphenyl, for 4.6 mm ID columns, Phenomenex) using a liquid chromatograph Agilent 1260 Infinity II (Agilent Technologies, Santa Clara, CA, USA) with quaternary pump and diode array detector. The column was thermostated at 35 °C. Methanol/acetic acid 1% (20:80 v/v) was used as a mobile phase. The flow rate of the mobile phase was 1 mL min−1. The separated CQA and caffeine, respectively, were detected at 273 nm. The calibration curve was used for the quantitative determination; the calibration curve points ranged from 10 to 100 µg mL−1.
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4

Proteome Analysis by LC-MS/MS with TCEP and Trypsin

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Calcium calibration buffer kit, Invitrogen cat. no. C3008MP

Chloroacetamide, Sigma cat. no. C0267

TCEP, Sigma-Aldrich cat. no. C4706-2G

Rappsilbers Stage tipping Paper (23), C-18 material: CDS Empore C18 Extraction Disks, Fisher cat. no. 13-110-016

Formic acid for HPLC LiChropur, Sigma cat. no. 5438040100

Trifluoroacetic acid (TFA), HPLC Grade, 99.5+%, Alfa Aesar, cat. no. AA446305Y

Acetonitrile (ACN), Sigma-Aldrich cat. no. 271004-100 ML

Mass spectrometer: LC-MS: Orbitrap Fusion Lumos Tribrid (Thermo Fisher Scientific) and EASY-nLC 1200 System (Thermo Fisher Scientific)

Triethylammonium bicarbonate buffer 1.0 M, pH 8.5 ± 0.1, Sigma cat. no. T7408

Ethanol for HPLC, Sigma cat. no. 459828

Promega trypsin, cat no. V5111

Methanol for HPLC, Sigma cat. No. 494291

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5

Acquisition of Bioactive Compounds

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Quercetin, eriodictyol, eriocitrin, neoeriocitrin, kaempferol, luteolin, apigenin, oroxylin A, baicalein 7-O-methyl ether, gallic acid, feruloyl-CoA, and scopoletin were purchased from Shanghai Yuanye Biotechnology Co., LTD (Shanghai, China). Baicalein, isorhamnetin, and SAM were purchased from Aladdin (Shanghai, China). Chrysoeriol and homoeriodictyol were purchased from BioBioPha (Kunming, China). 7,8-dihydroxyflavone and 3′,4′-dihydroxyflavone were purchased from TCI (Shanghai, China). 8-Hydroxy-7-methoxyflavone was purchased from Biosynth (St. Gallen, Switzerland) and caffeic acid was purchased from Sigma-Aldrich (St. Louis, MO, USA). Esculetin was purchased from SinoStandards (Chengdu, China) and caffeoyl-CoA was purchased from ZZStandard (Shanghai). The chromatographic grade acetonitrile and methanol for HPLC were purchased from Sigma-Aldrich.
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6

Characterization of Arbutus unedo L. Fruit Extracts

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All solvents and reagents were of high quality with a high grade of purity. Ethanol ≥ 99.9% ACS for analysis was obtained from VWR International (Milano, Italy). Hydrochloric acid 37% RPE for analysis, potassium bicarbonate, anhydrous sodium carbonate for analysis, and gallic acid ACS for analysis were obtained from Carlo Erba (Milano, Italy). Methanol for HPLC, n-hexane anhydrous at 95%, chloroform for chromatography, and 1-butanol ACS reagent ≥ 99.5 were acquired from Sigma-Aldrich Chemical Company (Milano, Italy). Folin–Ciocâlteu reagent and acetonitrile hypergrade for LC–MS were purchased from Merck Millipore GmbH (Milano, Italy). 2,2-Diphenyl-1-picrylhydrazyl (DPPH) was obtained from Alfa Aesar (Thermo Fisher Scientific companies in Rodano, Milano, Italy). Malvidin-3-O-glucoside, naringin, catechin, quercetin, gallic acid, vanillic acid, caffeic acid, ferulic acid, and amino acid mixture were purchased from Merck (Milano, Italy).
Bidistilled water was utilized throughout the preparation of the solutions. The extracts obtained from the different fruits of Arbutus unedo L. were used without any purification, and all the analyzed solutions, where necessary, were prepared by diluting the stock solutions of the extracts in water or in a hydroalcoholic solution.
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7

Analytical Method for Sulfonamide Antibiotics

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Ammonium molybdate tetrahydrate (H24Mo7N6O24·4H2O) (99%), thioacetamide (TAA) (98%), sulfathiazole (STZ), sulfadimidine (SDD), sulfadiazine (SDZ), sulfamethoxazole (SMZ), sulfacetamide (ST), sulfachloropyridazine (SCD), N4-phthalylsulfathiazole (PST), succinylsulfathiazole (SST), sodium hydrogen phosphate (Na2HPO4), sodium dihydrogen phosphate (NaH2PO4), methanol for HPLC (99.9%) and acetonitrile for HPLC (99.9%) were purchased from Sigma-Aldrich (St Louis, USA). Acetone, sodium hydroxide (NaOH) and hydrochloric acid (HCl) were purchased from Beijing Chemical Works (Beijing, China). Polyethylene glycol (PEG4000) was purchased from Merck (Germany). Ultrapure water (18.2 MΩ cm) was prepared using a Milli-Q Gradient ultrapure water system (Millipore, Milford, MA, USA).
The eight SAs were dissolved in a 0.1 mol l−1 NaOH solution to prepare standard stock solutions of 2.0 mg ml−1 for each SA, and these standard solutions were stored at 4°C and protected from light. The working solutions to be analysed were diluted with ultrapure water. The calibration standards of SAs were prepared with five levels of concentration in the range of 0.3 to 30 µg ml−1.
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