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8 protocols using sr bi

1

Western Blot Analysis of Lipid Transporters

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At the end of the incubation with glucose, cells were lysed in M-PER Mammalian Protein Extraction buffer (Pierce, Rockford, IL), and protein concentrations were quantified by Lowry protein assay (Bio-RAD, Hercules, CA). Aliquots of total cell lysates obtained from NHMC or HK-2 cells under control or experimental conditions, or from renal cortical tissue (20 µg total protein as determined by the Lowry protein assay) were denatured with sample loading buffer containing 5% β-mercaptoethanol (Invitrogen, Grand Island, NY). Samples were then heated at 95°C for five minutes and subjected to SDS-PAGE followed by Western blot. Membranes were extensively washed with TBS-T in between all steps. Membranes were probed respectively with primary antibodies of ABCA1 (Novus Biologicals, St. Louis, MO), ABCG1 (Santa Cruz Biotechnology, Dallas, TX), SR-BI (Novus Biologicals, St. Louis, MO), CD36, SR-AI, LOX-1, LXR-α, and LXR-β (Abcam, Cambridge, UK) (diluted 1∶1,000), followed by the respective secondary antibodies conjugated to HRP (Cell Signaling Technology, Danvers, MA) (diluted 1∶2,500). Protein bands were visualized with ECL Plus according to the manufacturer's instructions (GE Healthcare, Buckinghamshire, UK).
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2

Antibody Panel for Molecular Markers

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Mouse anti-ICAM-1(Cat#: sc107), VCAM-1(Cat#: sc13160), GAPDH (Cat#: sc365062) SRA (Cat#: sc56777), αSMA (Cat#: sc130617), CD36 (Cat#: sc70644), and CD68 (Cat#: sc20060) monoclonal antibodies were purchased from Santa Cruz Biotechnology, Inc (Santa Cruz, CA). Rabbit anti-ABCG1 (Cat#: NB400-132), ABCA1(Cat#: NB400-105) and SRBI (Cat#: NB400-104) polyclonal antibodies were purchased from Novus Biologicals (Littleton, CO). Mouse anti-IL-1β (Cat#: #12242) monoclonal antibody was purchased from Cell Signaling Technology. Mouse anti-Arg (Cat#: ab239731) monoclonal antibody were purchased from Abcam (Cambridge, MA). Mouse anti-rabbit IgG-R (Cat#: sc2492), mouse anti-rabbit IgG-FITC (Cat#: sc2359) and m-IgGκ BP-FITC (Cat#: sc516140) antibodies were purchased from Santa Cruz Biotechnology, Inc (Santa Cruz, CA). Astragalus flavone (Cat#: SA9780) was purchased from Solarbio (Beijing, China).
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3

Biochemical Characterization of SR-BI Interactions

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PS (Avanti) was loaded onto nitrocellulose membrane-C (HyBond) (14 (link)) and incubated with glutathione S-transferase (GST)-tagged SR-BI (Novus) or GST alone. The bound protein was detected by anti-SR-BI (Novus) or anti-GST (Novus) and secondary antibody (Sigma). For a cell-based assay, apoptosis was induced in SR-BI−/− macrophages, and exposure of PS was analyzed by annexin V directly or by incubation with GST-SR-BI protein or GST alone. SR-BI was detected using anti-SR-BI antibody.
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4

Protein Expression Analysis of ABCA1, ABCG1, and SR-BI

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PNT-2, LNCaP and PC-3 cells were lysed in 20 mmol/L Tris buffer containing 4% SDS, 20% glycerol, 1 mmol/L EDTA, 1 mmol/L sodium orthovanadate, 1 mmol/L NaF, 1 μg/mL leupeptin, 1 mmol/L benzamidine, 10 μg/mL soy trypsin inhibitor, 1 mmol/L PMSF, and 0.5 mmol/L DTT. Cell debris was removed by centrifugation and protein concentration was determined by the micro-bicinchoninic acid assay. Proteins were separated by 10% SDS-PAGE and transferred on a nitrocellulose membrane. Membranes were developed against ABCA1, ABCG1 and SR-BI (Novus Biologicals, USA), stripped and reprobed with an antibody against β-actin (Sigma Aldrich, Germany). Further details are provided in Table S2. Bands were visualized by ECL (GE Healthcare Biosciences, Sweden) and band densities were evaluated with a GS-690 Imaging Densitometer equipped with the Multi-Analyst software (Bio-Rad Laboratories).
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5

Antibody-Based Protein Detection Protocol

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All antibodies used in this study were obtained commercially: ApoB (ab31992, Abcam), ApoE (ab52607, Abcam), α-Tubulin (T6074, Sigma), HNF4α (sc-6556, Santa Cruz), GATA-4 (sc-1237, Santa Cruz), Oct3/4 (sc-9081, Santa Cruz), SR-BI (NB400–104, Novus Biologicals), AFP (A8453, Sigma), claudin-1 (ABN-H00009076-M01–100, Biozol), CD81 (clone M3863 (link)), albumin (A6684, Sigma), occludin (33–1500, Life Technologies), nuclear RED (DRAQ5) (65–0880–92, eBioscience), HRP-conjugated secondary antibodies (Jackson ImmunoResearch), and Alexa 488- and Alexa 594-secondary antibodies (donkey, IgG (H + L), Life Technologies). 60% iodixanol was obtained from Progen (OptiPrep, Axis Shield). If not stated otherwise, cell culture media and supplements were purchased from Gibco/Life Technologies or Sigma and fine chemicals from AppliChem or Sigma.
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6

Immunohistochemical Analysis of SR-BI and vWF

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Slides were immune-labelled using the UltraVision LP Detection System (Thermo Scientific, Fremont, CA, USA) according to the manufacturer’s instructions. SR-BI (Novus Biologicals, Littleton, USA, 2 µg/mL, rabbit anti-human, polyclonal) or vWF (Dako, 0.725 µg/mL, immunoglobulin fraction, rabbit anti-human, polyclonal) were applied for 30 min at room temperature. After three washings in PBS-T, slides were incubated with primary antibody enhancer for 10 min, followed by HRP-Polymer for 15 min. The slides were washed again three times in PBS-T, and immune-labelling was visualized by a 5 min exposure to 3-amino-9-ethylcarbacole (ECA, all from UltraVision kit, Thermo Scientific). The slides were counterstained with Mayer’s hemalum (Merck, Darmstadt, Germany) and after washing in distilled water mounted with Kaiser’s glycerol gelatin (Merck).
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7

Western Blot Analysis of UPR Proteins

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Cellular or nuclear extracts were prepared as previously described36 (link). They were then subjected to western blot analyses using CHOP (Santa Cruz), bip (Abcam), phosphorylated PERK (Santa Cruz), phosphorylated eIF2α(Santa Cruz), ATF6 (Santa Cruz), histone H3 (Abcam), SR-BI (Novus Biologicals), PDZK1 (Abcam) and β-actin (Sigma) antibodies. The proteins were visualized and quantified using an enhanced chemiluminescence method (Pierce) and quantified using a Chemiluminescence imaging system (Bioshine Chemi Q 4800mini, Shanghai, China).
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8

Immunodetection Antibodies and Astragalus

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Mouse anti-ICAM-1(Cat#: sc107), VCAM-1(Cat#: sc13160), GAPDH (Cat#: sc365062) SRA (Cat#: sc56777), αSMA (Cat#: sc130617), CD36 (Cat#: sc70644), and CD68 (Cat#: sc20060) monoclonal antibodies were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Rabbit anti-ABCG1 (Cat#: NB400-132), ABCA1(Cat#: NB400-105) and SRBI (Cat#: NB400-104) polyclonal antibodies were purchased from Novus Biologicals (Littleton, CO). Mouse anti-IL-1β (Cat#: #12242) monoclonal antibody was purchased from Cell Signaling Technology. Mouse anti-Arg (Cat#: ab239731) monoclonal antibody were purchased from Abcam (Cambridge, MA). Mouse anti-rabbit IgG-R (Cat#: sc2492), mouse anti-rabbit IgG-FITC (Cat#: sc2359) and m-IgGκ BP-FITC (Cat#: sc516140) antibodies were purchased from Santa Cruz Biotechnology, Inc. (Santa Cruz, CA). Astragalus avone (Cat#: SA9780) was purchased from Solarbio (Beijing, China).
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