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2 protocols using hpa005456

1

Gastric Epithelial Cell Protein Extraction

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Isolated gastric corpus epithelial cells were lysed in ice-cold lysis buffer (50 mM Tris-HCl, pH 7.5, 150 mM NaCl, 1 mM EDTA, 1% NP-40, 0.1% SDS, and 0.25% sodium deoxycholate) supplemented with 1 mM PMSF and protease inhibitor cocktail (Roche). The concentration of the isolated protein was determined using a detergent-compatible protein assay (Bio-Rad Laboratories). The samples were prepared by boiling in SDS loading buffer (100 mM Tris-HCl, pH 6.8, containing 4% SDS, 0.02% bromophenol blue, and 2% 2-mercaptoethanol). Whole-cell lysates were fractionated by SDS-PAGE and transferred to a nitrocellulose membrane (Bio-Rad Laboratories). The blotted membrane was blocked for 1 h in Tris-buffered saline with Tween 20 (10 mM Tris, pH 8.0, 150 mM NaCl, 0.5% Tween 20) containing 5% skim milk and then incubated with the primary antibodies against the ARID1A (Sigma-Aldrich; HPA005456) or GAPDH (Abcam; ab181602). Secondary peroxidase-labeled anti-mouse or anti-rabbit IgG antibodies were purchased from Thermo Fisher Scientific. Membranes were washed with Tris-buffered saline with Tween 20 and developed with SuperSignal West Pico Chemiluminescent Substrate (Thermo Fisher Scientific; 34080) using the ChemiDoc MP system (Bio-Rad Laboratories).
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2

Multimarker Immunohistochemistry of Murine Tissues

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ARID1A (Sigma-Aldrich; HPA005456, 1:500), CD4 (Abcam; ab183685, clone: EPR19514, 1:500), CD8 (Abcam; ab209775, clone: EPR20305, 1:200), Ly6G (BioLegend; 127601, clone: 1A8, 1:500), SMAα (Sigma-Aldrich; A2547, clone: 1A4, 1:4000), AR (Santa Cruz Biotechnology; SC816S, clone: N-20, 1:500), CK8 (Abcam; ab154301, 1:4000) and Ki67 (Cell Signaling Technology; 12202, clone: D3B5, 1:500) antibody were used for immunohistochemistry. Formalin-fixed paraffin-embedded (FFPE) tissue sections were de-paraffinized. The tissue sections were blocked first for 1 h in MOM Blocking reagent (Vector Labs; MKB-2213). Sections were then incubated sequentially with the primary antibody overnight and followed by 1 h incubation with biotinylated anti-mouse (Vector Labs; BA-9200-1.5) or rabbit (Vector Labs; BA-1000-1.5) secondary antibodies in a 1:500 dilution. The Streptavidin-HRP and DAB detection kit (Vector Labs) were used according to the manufacturer’s instructions. For quantification, positive cells were counted from at least three random slides of each mouse for a total of 4–8 pairs.
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