The largest database of trusted experimental protocols

Cycler 480 2

Manufactured by Roche

The Cycler 480 II is a real-time PCR instrument designed for accurate and reliable nucleic acid amplification and detection. It features a high-performance optical system, precise temperature control, and intuitive software for efficient data analysis.

Automatically generated - may contain errors

2 protocols using cycler 480 2

1

Quantitative RT-PCR of Fibrosis Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
The total RNA was extracted from the tissue samples using TRI reagent (Thermo Fisher Scientific), and cDNA was synthesized using the Transcriptor First Strand cDNA Synthesis Kit (Roche) with random hexamer. The resulting cDNA samples were analyzed using SYBR Green on the Roche Cycler 480 II. The PCR primers used for amplifying COL1α1, COL3α1, and TGF-β1 were as follows: COL1α1—F: 5′-aatggtgctcctggtattgc-3′, R: 5′-ggttcaccactgttgccttt-3′; COL3α1—F: 5′-gggatccaatgagggagaat-3′, R: 5′-ggccttgcgtgtttgatatt-3′; and TGF-β1—F: 5′-tgagtggctgtcttttgacg-3′, R: 5′-tgggactgatcccattgatt-3′. The amplification conditions included an initial denaturation at 95°C for 5 minutes, followed by 45 cycles of denaturation at 95 °C for 10 seconds, annealing at 60 °C for 10 seconds, and extension at 72 °C for 10 seconds. Finally, melting curve analysis was performed from 50 to 105 °C with readings taken every 0.5 °C. Statistical comparison of the expression levels of COL1α1, COL3α1, and TGF-β1 was analyzed using paired t-test.
+ Open protocol
+ Expand
2

RNA Extraction and RT-qPCR Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Total RNA was extracted using TRIzol reagent (#17061, iNtRON, Gyeonggi-do, Korea). The RNA samples were adjusted to the same concentration and reverse-transcribed using a high-capacity cDNA reverse transcription kit (#4368813, Applied Biosystems, Waltham, MA, USA). The cDNA samples were analyzed using a Cycler® 480 II with LightCycler® 480 SYBRGreenI master mix (#04887352001, Roche Diagnostics, Basel, Swiss), according to the manufacturer’s instructions. The RT-qPCR analysis was performed with an initial denaturation step of 5 min at 95 °C, followed by 45 cycles at 95 °C for 10 s, 60 °C for 10 s, and 72 °C for 10 s. Quantification of RNA values was determined automatically using the LightCycler® 480 program (Roche Diagnostics, Basel, Switzerland). The RT-qPCR primer sequences used were as follows in the table below (Table 1).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!