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Taqi v2

Manufactured by New England Biolabs

TaqI-v2 is a type II restriction endonuclease enzyme that recognizes and cleaves the DNA sequence 5'-TCGA-3' and its complementary sequence 5'-AGCT-3'. It is a variant of the original TaqI enzyme with improved thermal stability and activity.

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2 protocols using taqi v2

1

Enzymatic DNA Cleavage Protocols

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EcoRI (New England BioLabs Inc. Cat#R0101S) activity in perchlorate solutions generally consisted of 0.05 U/µL enzyme, 1X EcoRI buffer (New England BioLabs Inc. Cat#B7006S), and 1 µM duplex DNA (see Supplementary Table 1). NaX concentration varied per experiment as noted in the text. Reactions were started by incubating at 37 °C. Reactions were stopped and cleaned up with the addition of 75% ethanol. DNA cleavage was quantified using a 5′-fluorescein label and a 20% urea-PAGE gel.
RNase HII (New England BioLabs Inc. Cat#M0288S) was assessed with the same protocol but in 1X ThermoPol Buffer (New England BioLabs Inc. Cat#B9004S).
TaqI-v2 ((New England BioLabs Inc. Cat#R0149S) was assessed with the same protocol but in 1X rCutSmart Buffer (New England BioLabs Inc. Cat#B6004S) and incubated at 65 °C. DNA was resolved on a 10% urea-PAGE gel.
All gels were analyzed using an Omega Lum G Imaging System using the Omega Lum Image Capture Software V 2.1.2017.0. GelQuant (GelQuant.NET V 1.8.2) was used for quantification.
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2

Generation and Characterization of Slack+/R455H Mice

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Slack+/R455H mice were generated in the C57BL/6J mouse strain using CRISPR/Cas9 via the Yale Genome Editing Center. The generation and basic characterization of this mouse model are available in our previous paper.19 (link) Heterozygous (WT/R455H, Slack+/R455H) mice were used as breeding pairs to obtain WT, heterozygous and homozygous (R455H/R455H, SlackR455H/R455H) embryos for study. Littermates were labeled and genotyped using gene-specific polymerase chain reaction (PCR) on DNA extracted from tail tissues with primers (Slack forward primer: 5′-ACAGCTGCGGTGAGTTCAGG-3′; Slack reverse primer: 5′-GGGAAGGTTGTCCCAAAGGAGAGC-3′) with standard thermocycler amplification conditions. Following amplification, a restriction cut was performed with the enzyme TaqI-v2 (NEB, R0149S) to distinguish WT (196 and 112 bp products after cut), R455H heterozygous (112, 196, and 308 bp products) and homozygous (308 bp product) alleles. Whenever possible, investigators were blind to the genotype of the mice. GAD67-GFP mice were purchased from Jackson Laboratories (Bar Harbor, MA). For all experiments, male and female littermates were used for each genotype. All experiments were performed in accord with the NIH Guidelines for the Care and Use of Laboratory Animals and approved by Yale University’s Institutional Animal Care and Use Committee (IACUC).
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