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5 protocols using ncl l p53 do7

1

Mutated p53 Immunostaining Protocol

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The streptavidin-biotin method was used for mutated p53 immunostaining. Antigen retrieval was performed by autoclaving the tissues in pH 6.0 citrate buffer at 121˚C for 15 min.
Endogenous peroxidase activity was quenched using the same method used for PHLDA1-IHC. The sections were sequentially incubated with a polyclonal antihuman p53 antibody (1:200; NCL-L-p53-DO7; Leica Biosystems) for 60 min at room temperature, MULTI for 30 min at room temperature, DAB for color development, and 1% Mayer's hematoxylin for the counterstain. Then, the sections were dehydrated by immersion in a series of alcohol solutions and xylene according to the method used for PHLDA1-IHC. As Shigaki et al (15 (link)) reported, the p53 staining pattern in the nucleus was characterized as sporadic, mosaic, nested, and diffuse. Nested or diffuse patterns were considered to represent p53-IHC positivity regardless of the intensity, whereas the sporadic and mosaic patterns were considered to represent p53-IHC negativity.
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2

Western Analysis of Cell Signaling Proteins

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Western analysis was carried out as previously described [38 (link)]. Primary antibodies used were p53 1:1000 (NCL-L-p53-DO7, Leica Biosystems Ltd, Newcastle upon Tyne, UK), MYCN 1:500 (sc-53993, Santa Cruz Biotechnology Inc., Dallas, TX, USA), MDM2 1:200 (OP46, Merck), p21WAF1 1:200 (OP64, Merck), p53 upregulated modulator of apoptosis (PUMA) 1:500 (ab9643, Abcam, Cambridge, UK) and GAPDH 1:500 (sc-25778, Santa Cruz). Experiments were at least n=3.
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Western Blotting of Cell Signaling Proteins

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Western blotting was carried out as described in (31 (link)). Antibodies used were MDM2 (Ab-1) 1:300 (#: OP46-100UG, Merck Millipore), MDMX (#: A300287A-2 Bethyl laboratories), WIP1 (F-10) 1:200 (#: sc-376257, Santa Cruz Biotechnology), p53 1:500 (#: NCL-L-p53-DO7, Leica Microsystems Ltd.), phospho-p53Ser-15 1:1000 (#: 9284 Cell Signalling), p21WAF1 1:100 (#: OP64, Calbiochem), BAX 1:1000 (#: 2772S, Cell Signalling), cleaved caspase-3 1:1000 (#: 9664S, New England Biolabs Ltd.), actin 1:3000 (#: A4700, Sigma-Aldrich). Secondary goat anti-mouse/rabbit HRP-conjugated antibodies (#: P0447/P0448, Dako) were used at 1:1000. All antibodies were diluted in 5% milk/1 × TBS-tween (w/v). Proteins were visualised using enhanced chemiluminescence (GE Life Sciences) and X-ray film (Fujifilm). Densitometry was carried out using ImageJ software.
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4

Western Blot Analysis of Cellular Proteins

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Lysis buffer (12.5 ml Tris HCL, 2g SDS, 10 ml Glycerol, 67.5 ml Distilled Water) was used to harvest whole-cell lysates, followed by sonication. The concentration of protein in the cell lysates was estimated by using a bicinchoninic acid (BCA) assay. Novex® 4-20% Tris-Glycine 12-well polyacrylamide gradient gels (Invitrogen, UK) were used to separate proteins. The separated proteins were transferred by perpendicular electrophoresis to a nitrocellulose Hybond™ C membrane (Amersham, Buckinghamshire, UK). Monoclonal Mouse Anti-Human primary antibodies Actin 1:1000 (#: A4700, Sigma-Aldrich), MDM2 1:300 (#: OP46-100UG, Merck Millipore), p21WAF1 1:100 (#: OP64, Calbiochem), PUMA 1:1000 (#dd716, Santa Cruz Biotechnology) and p53 1:500 (#: NCL-L-p53-DO7, Leica Microsystems Ltd.) were used. Secondary goat anti-mouse HRP-conjugated antibodies (#: P0447/P0448, Dako) were used at 1:1000. All antibodies were diluted in 5% milk/1XTBS-Tween (w/v). Enhanced chemiluminescence (GE Life Sciences) and X-ray film (Fujifilm) were used to visualize the proteins.
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5

Nutlin-3 Treatment Protocol

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Cells were treated with Nutlin-3 at indicated doses for 4 h before cells lysates were harvested. Primary antibodies: mouse anti-MDM2 (1:300, # OP46-100UG, Merck Millipore), mouse anti-p21WAF1 1:100 (#: OP64, Merck Millipore), mouse anti-p53 (1:500, # NCL-L-p53-DO7, Leica Microsystems Ltd., Newcastle upon Tyne, UK) and mouse anti-α-tubulin (1:20,000, # T6074, Sigma) as a loading control (Figure S2).
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