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3 protocols using lysosome tracker

1

Investigating NF-κB Signaling Pathways

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Dulbecco’s modified Eagle’s medium (DMEM) and penicillin-streptomucin (100×) were obtained from Invitrogen (Calsbad, CA, USA). Fetal bovine serum was from Hyclone (Logan, UT, USA) and was heat-inactivated at 56 °C for 30 min. Antibodies against p-NFκB, NFκB, p-IκBα, IκBα, p-ERK, ERK, p-JNK, JNK, p-p38, p38 were from Cell Signaling Technology (Danvers, MA, USA) and antibodies against β-actin and GAPDH were from Santa Cruz Biotechnology (Santa Cruz, CA, USA). ECL reagents were from Thermo Pierce (Rockford, IL, USA). SP600125, U0126, SB203580, BAY11-7082 were purchased from Selleck (Houston, TX, USA). Fucoidin and carrageenan were from Sigma-Aldrich (St. Louis, MO, USA). Tauroursodeoxycholic acid was from Calbiochem (KGaA, Darmstadt). Lysosome-tracker, ER-tracker and fluo-3/AM were from Beyotime (Haimen, China). Cellular Ca2+ ATPase activity Kit was from Jiancheng Biotechnology (Nanjing, China). TNF-α and IL-6 ELISA kit were from Biolegend (San Diego, CA, USA).
C57BL/6 female mice, 6–8 weeks of age, were from SLAC laboratory animal company (Shanghai, China). All experiments were approved by a local ethical committee.
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2

Fluorescent Imaging of Organelles

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HT1080 cells were seeded into a 35-mm optical vessel. After incubation at 37 °C for 24 h, 500 μL of Cy5-labeled aptamer was appended at a total concentration of 250 nM. After incubation for 1 h, the supernatant was removed and 500 μL of Mito-tracker (C1048, Beyotime) solution or lysosome-tracker (C1046, Beyotime) was added at a final concentration of 200 nM at 37 °C for 30 min. Fluorescence signals were detected by Zeiss LSM510. All experiments were repeated three times.
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3

Aptamer-Based Cellular Localization

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5637 cells (3 × 105) were seeded into a 35-mm optical vessel. After incubation at 37 °C for 24 h, 5637 cells were treated with 250 nM FAM-labeled aptamer BC-3. The supernatant was removed after incubation for 1 h and 5637 cells was added 200 nM of ER-tracker (C1041, Beyotime) solution or lysosome-tracker (C1046, Beyotime) separately at 37 °C for 30 min. Fluorescence signals were detected by Zeiss LSM510. All experiments were repeated three times.
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