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Ligthcycler 96 instrument

Manufactured by Roche
Sourced in United States

The LightCycler 96 Instrument is a real-time PCR system designed for flexible and efficient nucleic acid amplification and analysis. It provides a compact and easy-to-use platform for a variety of real-time PCR applications.

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3 protocols using ligthcycler 96 instrument

1

Quantitative Gene Expression Analysis

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Total RNA from HepG2 cells, liver, and epididymal adipose tissue was extracted with Trizol reagent (Invitrogen, Carlsbad, CA, USA) according to the manufacturer’s instructions. RNA quantity and quality were measured with a NanoDrop spectrophotometer (Thermo Fisher Scientific, Waltham, MA, USA). Total RNA (2 μg) was reverse-transcribed to complementary DNA (cDNA) in a 50-μL final volume using 690-ng random primers, 0.72 mM deoxynucleotide triphosphate (dNTP) mix, 1× first-strand buffer, 3.6 mM dithiothreitol (DTT), 5 U of RNAase inhibitor, and 260 U Moloney Murine Leukemia Virus (M-MLV) reverse transcriptase (Invitrogen, Carlsbad, CA, USA). The reaction was incubated for 10 min at 25 °C, 60 min at 37 °C, 15 min at 70 °C, and 5 min at 4 °C. Afterward, cDNA was used as a template for amplification in real-time PCR reactions. Amplification was carried out in a 10-μL final volume containing 2 μL of cDNA, 1× Universal PCR Master Mix, and 1× specific Taqman primer/probe (Applied Biosystems, Foster City, CA, USA) for enlisted genes in Table S1 according to the manufacturer’s directions using a LigthCycler 96 instrument (Roche Molecular Systems, Pleasanton, CA, USA). The messenger RNA (mRNA) expression mean of duplicates per sample was normalized to 18S. Data were analyzed using the 2-Δct method [34 (link)].
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2

Arabidopsis Protein Interactions via GST-Pulldown

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Pull-down assays using Arabidopsis extracts and GST-fusion proteins produced in E. coli were carried out as described previously20 (link). Recombinant GST, GST-BZR1, GST-PIF3 and GST-PIF4 bound to glutathione sepharose beads were used separately to pull-down FLAG-RGA from protein extracts from PRGA:FLAG-RGA transgenic Arabidopsis in SPY sly1-10 rga-24 or spy-8 sly1-10 rga-24 background.
For RT-qPCR analysis, total RNA was isolated from 9-day old seedlings of ga1-3, ga1-3 spy-8 and ga1-3 spy-19 using a Quick-RNA MiniPrep kit (Zymo Reseaarch). First strand cDNA was synthesized using the Transcriptor First Strand cDNA Synthesis kit (Roche Applied Science). For qPCR, the FastStart Essential DNA Green Master mix was used on a LigthCycler 96 Instrument (Roche Applied Science).
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3

Arabidopsis Protein Interactions via GST-Pulldown

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Pull-down assays using Arabidopsis extracts and GST-fusion proteins produced in E. coli were carried out as described previously20 (link). Recombinant GST, GST-BZR1, GST-PIF3 and GST-PIF4 bound to glutathione sepharose beads were used separately to pull-down FLAG-RGA from protein extracts from PRGA:FLAG-RGA transgenic Arabidopsis in SPY sly1-10 rga-24 or spy-8 sly1-10 rga-24 background.
For RT-qPCR analysis, total RNA was isolated from 9-day old seedlings of ga1-3, ga1-3 spy-8 and ga1-3 spy-19 using a Quick-RNA MiniPrep kit (Zymo Reseaarch). First strand cDNA was synthesized using the Transcriptor First Strand cDNA Synthesis kit (Roche Applied Science). For qPCR, the FastStart Essential DNA Green Master mix was used on a LigthCycler 96 Instrument (Roche Applied Science).
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