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19 protocols using ilomastat

1

Optimized Cell Culture Techniques for In Vitro Studies

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Dulbecco's modified Eagle medium (DMEM), MEM non-essential amino acids and 0.25% trypsin/EDTA solution were purchased from Invitrogen (Gaithersburg, MD). Platelet-derived growth factor BB isotype (PDGF), GM6001 (also known as galardin or ilomastat) were obtained from Millipore (Billerica, MA). BB-94 (also known as batimastat) was purchased from Tocris (Bristol, UK). Fetal bovine serum (FBS), fatty acid-free and fraction V bovine serum albumin (BSA), RPMI vitamin mix, HEPES, DMSO, thymidine and Sodium bicarbonate were obtained from Sigma-Aldrich (St. Louis, MO). Penicillin, streptomycin, and amphotericin B were obtained from Lonza inc. (Walkersville, MD). Type I rat tail collagen was purchased from BD Biosciences (Bedford, MA). PureCol® Type I bovine collagen was purchased from Advanced BioMatrix, Inc. (San Diego, CA). Alexa Fluor 488 and Propidium Iodine (PI) were obtained from Molecular Probes, Inc. (Eugene, OR). Collagenase D from Clostridium histolyticum and RNase (DNase free) were purchased from Roche (Indianapolis, IN). Rabbit eyes were purchased from Pel Freez (Rogers, AR). Human glu-plasminogen was purchased from Haematologic Tech (Essex Junction, VT). Glass bottom dishes were purchased from MatTek (Ashland, MA). MT1-MMP mouse-anti-human monoclonal antibody (C9, Santa Cruz, TX)
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2

TIMP-2 Signaling Modulation Assay

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Subconfluent cells grown for 24 h in medium containing 0.5% FCS with or without DOX (1 μg/ml) were incubated with the indicated concentrations of recombinant human TIMP-2 (Peprotech, Rocky Hill, NJ, USA) for 15 min. TIMP-2 was added to the cultures in a volume of 1 μl without changing the medium. An equivalent volume of medium without TIMP-2 was added as a control. Where indicated, Ilomastat (GM6001, 50 μM; Millipore, Billerica, MA, USA), PD173074 (5 nM or 21.5 nM; Sigma-Aldrich, St. Louis, MO, USA), U0126 (10 μM; Promega, Madison, WI, USA) or LY294002 (10 μM; BioVision, Milpitas, CA, USA) were added to the medium 15 min (Ilomastat and PD173074) or 30 min (U0126 and LY294002) before TIMP-2 addition.
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3

Matrigel-Coated Transwell Invasion Assay

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Cells invasion was performed using a polycarbonate cell culture insert with a pore size of 8.0 µm (Sigma-Aldrich) coated with Matrigel (0.25 µg/µL; BD Biosciences, Franklin Lakes, NJ, USA). Cells suspended in 200 µL of their own growth medium were seeded in the upper compartment, while in the lower chamber, fresh complete medium was added as chemo attractant.
Cells were incubated for 6 h at 37 °C, 10% CO2 in air, and 25 µM Ilomastat was used as a control for metalloprotease inhibition (Millipore, Billerica, MA, USA). After incubation, filters were removed and the non-invading cells on the upper surface were wiped off mechanically with a cotton swab. Cells on the lower side of the filters were fixed overnight in ice-cold methanol, then stained using a DiffQuick kit (BD Biosciences, Franklin Lakes, NJ, USA) and pictures of randomly chosen fields were taken, as previously reported [26 (link)].
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4

Chondrogenic Differentiation of hMSC-Collagen Microspheres

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At the day 0 of chondrogenic differentiation induction, hMSC-collagen microspheres were divided in inhibitor treatment groups. Microspheres were maintained in CM for 28 days; each group treated with protease inhibitors at an optimal concentration previously determined: E-64D (Aloxistatin, Cayman chemical, 20mM) and/or GM6001 (Ilomastat, Millipore, 25mM). Inhibitor stock solutions were prepared with DMSO at the concentration of 1mg/ml. One control group was treated with DMSO alone to check the effect of DMSO. The medium with inhibitors was freshly prepared and changed three times a week.
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5

Cell Invasion Assay with Matrigel

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Cells invasion was studied in Boyden chambers. Cells were loaded in the upper wells which were separated by 8 μm pore-size polycarbonate filters coated with Matrigel (12.5 μg/filter; BD Biosciences, Franklin Lakes, New Jersey) from the lower wells. Cells (1x10 5 ) were suspended in 200 μL of serum free medium and seeded in the upper compartment, the same medium was added in the lower chamber. Cells were incubated for 6 h at 37 °C, 10% CO2 in air, in the presence of Ilomastat (10 M), a MMPs inhibitor (Millipore, Billerica, Massachusetts) or compounds 18-20 at 1 M or 10 M. After incubation, filters were removed and the non-invading cells on the upper surface were wiped-off mechanically with a cotton swab. Cells on the lower side of the filters were fixed overnight in ice-cold methanol, and then stained using a DiffQuick kit (BD Biosciences) and pictures of randomly chosen fields were taken.
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6

Ilomastat-Loaded HA Hydrogel Delivery

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Example 8

Ilomastat was purchased from Sigma Aldrich. Ilomastat is also known as galardin or GM6001 and is of the following formula.

[Figure (not displayed)]

Ilomastat was ground into a fine powder of uniform microparticles. These microparticles were suspended in the dissolved HA-aldehyde and HA-hydrazide solutions at 10 μg per 100 μl, of polymer solution. At this concentration Ilomastat remains a solid particle within the polymer solution. HA-aldehyde and HA-hydrazide polymers were mixed 1:1 aldehdye:hydrazide to induce crosslinking into a solid gel. The gels were incubated in phosphate buffered saline at 37° C. After 14 days less than 10% of the Ilomastat was released from the gels due to hydrophobic interactions of the Ilomastat in the microparticles. The gels were then exposed to collagenase 200 U/mL and the gels degraded. Once the gels were degraded, Ilomastat was then solubilized in the larger volume of the buffer as evidenced by HPLC.

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7

Azocasein Assay for Protease Activity

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Protease activity in culture supernatants was determined by azocasein assay. Briefly, 350 µl reaction mixture containing 0.1 M Tris-HCl pH 8.0 and 1% azocasein (Sigma-Aldrich, cat. n. A2765) resuspended in 0.5% NaHCO3 was added to 150 µl supernatant with/without MMPIs Ilomastat, Marimastat, Batimastat (Sigma-Aldrich, cat. n. M5939, M2699, SML0041) and incubated at 37°C for 20 minutes shaking. After addition of 1 ml 7% ice-cold perchloric acid, the solution was centrifuged. 150 µl 10 N sodium hydroxide were added to the clear supernatant and OD at 430 nm was measured. One protease unit was calculated as the amount of enzyme producing an increase of 1 OD unit per hour.
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8

3D Collagen Gel Contraction Assay

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Serum starved ASM cells were suspended in a neutralized solution of bovine collagen-I (Sigma-Aldrich; C4243) and 10x DMEM (Sigma-Aldrich) and cast in 24-well tissue culture plates to create 7 mm-thick three dimensional (3D) collagen gels. Gels were allowed to set for 24 hours before being overlaid with DMEM. After 16 hours, gels released from wells and transferred to 6-well plates containing DMEM/F12 (Sigma-Aldrich) [36] (link). Contraction was stimulated with bradykinin (Sigma-Aldrich). Gel contraction was quantitated over 60 minutes using Genesnap camera (Genetools, Syngene, and Cambridgeshire, UK) with the reduction in initial gel area quantitated using Image J (http://rsb.info.nih.gov/ij). In experiments involving MMP inhibition, gels were treated with 10 µM ilomastat (Sigma-Aldrich) 1 hour prior to bradykinin stimulation.
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9

Ilomastat Administration in Mice

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Ilomastat (Sigma-Aldrich, St. Louis, MO), a broad spectrum MMPs inhibitor, was dissolved in a special solvent made by our institute [21 (link)]. For Ilomastat administration, mice were given 10 mg/kg of Ilomastat via intraperitoneal injection 2 h before irradiation referring to our previous study [1 (link)].
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10

Protease-Independent Angiogenesis and Invasion Assays

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Protease-indipendent angiogenic properties and invasion were evaluated by in vitro capillary morphogenesis and 3D-Boyden chamber assays, as described above, with Matrigel coating in the presence of a physiological protease inhibitor cocktail, consisting of α2-antiplasmin (plasmin inhibitor; 5 μg/ml), Cystatin (cysteine protease inhibitor; 5 μM), PAI 1 (plasminogen activator inhibitor; 10 ng/ml), TIMP1, TIMP2 and TIMP3 (metallo-protease inhibitors; 0,5 μg/ml each one) purchased by Abcam. A completely artificial protease inhibitor cocktail (composed by Ilomastat, leupeptin, pepstatin A, E-64 and aprotinin; Sigma Aldrich) used in a previous study [13 (link)] was also used. Concentrations used were selected according to the manufacturer’s instructions and literature [16 (link), 17 (link)]. Protease inhibitor cocktails were added to un-polymerized Matrigel solution on the upper surface of the porous filter. To induce the amoeboid phenotype, cells were treated overnight with the protease inhibitor cocktails at the same concentrations used in the invasion assay. Cell viability upon protease inhibitors treatment was evaluated by Trypan blue dye (Sigma) exclusion assay.
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