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Unity inova 500 mhz spectrometer

Manufactured by Agilent Technologies
Sourced in United States

The Unity Inova 500 MHz spectrometer is a nuclear magnetic resonance (NMR) instrument designed for high-resolution spectroscopy. It operates at a frequency of 500 MHz and is capable of performing various NMR experiments to analyze the chemical structure and properties of molecules.

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41 protocols using unity inova 500 mhz spectrometer

1

Comprehensive Spectroscopic Analysis of Novel Compounds

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IR absorption spectra were recorded in the range of 4000–230 cm−1 as KBr pellets on a BRUKER Tensor 27 spectrophotometer. 1H and 13C NMR spectra were recorded in dimethyl sulfoxide (DMSO-d6) on a Bruker Fourier 300 MHz and Varian Unity Inova 500 MHz spectrometer using TMS as internal reference. The EPR spectra were recorded in DMF at liquid nitrogen temperature (77 K) on an Electron Paramagnetic Resonance Spectrometer JEOL, JES-TE300, ITC Cryogenic System, Oxford. Magnetic moments were determined using a Johnson-Matthey magnetic susceptibility balance type msb model mk II 13094-3002, with the Gouy method at room temperature. Mass spectra were recorded in a JEOL, SX 102 A spectrometer on Bruker Microflex equipped with MALDI-Flight time. Single-crystal X-ray diffractions (SCXRD) were obtained in a Bruker diffractometer, model Smart Apex, equipped with Mo radiation (λ = 0.71073Å), CCD two-dimensional detector and low-temperature device. Data collection and data reduction were performed by APEX and SAINT-Plus programs [31 ]. These structures were solved by direct methods using SHELX-2013 software and refined by Full-matrix least-squares procedure on F2 using SHELX-2008 program [32 (link)].
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2

NMR Characterization of Biomolecular Samples

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NMR samples were prepared at a concentration of about 1 mM, in 0.6 mL (H2O/D2O 9:1 v/v), buffer solution having 10 mM KH2PO4/K2HPO4, 70 mM KCl and 0.2 mM EDTA (pH 7.0). All the samples were heated for 5–10 min at 90 °C and slowly cooled (10–12 h) to room temperature. The solutions were equilibrated for 24–48 h at 4 °C. The annealing process was assumed to be complete when the 1H NMR spectra were superimposable on changing time. NMR spectra were recorded with a Varian Unity INOVA 500 MHz spectrometer. The 1D proton spectra of the samples in H2O were recorded using pulsed field gradient DPFGSE for H2O suppression [47 (link)]. 1H-chemical shifts were referenced relative to external sodium 2,2-dimethyl-2-silapentane-5-sulfonate (DSS).
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3

NMR Sample Preparation and Characterization

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NMR samples were prepared at a concentration of approximately 2 mM in 0.6 mL (H2O/D2O 9:1 v/v) of buffer solution with 10 mM KH2PO4/K2HPO4, 70 mM KCl, and 0.2 mM EDTA (pH 7.0). All of the samples were heated for 5–10 min at 90 °C and slowly cooled (10–12 h) to room temperature. The solutions were equilibrated for several hours at 4 °C. The annealing process was assumed to be complete when the 1H NMR spectra were superimposable on changing time. NMR spectra were recorded with a Varian Unity INOVA 500 MHz spectrometer. 1D proton spectra of the samples in H2O were recorded using pulsed-field gradient DPFGSE for H2O suppression [41 (link)]. 1H-chemical shifts were referenced relative to external sodium 2,2-dimethyl-2-silapentane-5-sulfonate (DSS).
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4

Enzymatic Synthesis of Linoleic Acid Hydroperoxide

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Linoleic acid hydroperoxide (LHP) was enzymatically synthesized by the reaction of linoleic acid with soybean lipoxygenase, according to the method that was described by Ohkawa et al. [48 (link)], with some modifications. Briefly, 50 mg of linoleic acid was dissolved in 0.1 M borate buffer (pH 9). Subsequently, 15 munit/mg soybean lipoxygenase was added, followed by incubation under saturated oxygen conditions at 4 °C for 2 h. After incubation, 2.5 g of NaCl was added to stop the reaction, and the hydroperoxides were extracted with anhydrous diethyl ether. To dry the ether extract, anhydrous sodium sulfate was used to remove any water, and the extract was filtered. The filtrate was evaporated to dryness in a rotary evaporator, resuspended in MeOH, and stored at −80°C. The maximal absorption at 234 nm was used to calculate the final concentration of LHP by applying Beer’s law while using ε = 23,000 as the molar extinction coefficient. The LHP structure was determined on the basis of its mass (Micromass Quattro LC) and nuclear magnetic resonance (NMR, Varian Unity INOVA 500 MHz spectrometer).
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5

Structural Characterization of ALG

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The chemical structure of the extracted ALG was confirmed by Fourier Transform Infrared (FTIR) spectroscopy and nuclear magnetic resonance (NMR) and was compared with a commercial sample. For 1H NMR analysis, an ALG sample (10 mg/mL) was dissolved in D2O and analyzed on a Varian UNITY Inova 500 MHz spectrometer (Varian, Palo Alto, CA, USA).
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6

NMR Sample Preparation and Analysis

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NMR samples were prepared at a concentration of ∼1.2 mM, in 0.6 ml (H2O/D2O 9:1 v/v) buffer solution having 10 mM KH2PO4/K2HPO4 or NaH2PO4/Na2HPO4, 70 mM KCl or NaCl and 0.2 mM EDTA (pH 7.0). Samples purified by HPLC have been desalted, added with the buffer of suitable salt concentration, heated for 5–10 min at 90°C and slowly cooled (10–12 h) to room temperature. The solutions were equilibrated at least for 1 day at 4°C. The folding process was assumed to be complete when 1H NMR spectra were superimposable on changing time. NMR spectra were recorded with Varian Unity INOVA 500 MHz spectrometer. 1D proton spectra of the sample in H2O were recorded using pulsed-field gradient DPFGSE for H2O suppression (23 ). 1H-chemical shifts were referenced relative to external sodium 2,2-dimethyl-2-silapentane-5-sulfonate (DSS). Pulsed-field gradient DPFGSE sequence was used for NOESY (24 ) (180 and 80 ms mixing times) and TOCSY (25 ) (120 ms mixing time) experiments in H2O. All experiments were recorded using STATES-TPPI procedure for quadrature detection (26 ). In all 2D experiments, the time domain data consisted of 2048 complex points in t2 and 400–512 fids in t1 dimension. A relaxation delay of 1.2 s was used for all experiments.
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7

Multimodal Analysis of Biomolecules

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High-resolution mass spectrometric data were obtained on a Bruker maXis Impact nanoLC-QTOF-MS spectrometer in ESI mode. Luminescent measurement was performed on an Agilent Cary Eclipse fluorescence spectrophotometer. Optical absorbance was measured on a Multiskan GO Microplate spectrophotometer. 1H, 13C and 2D NMR data were recorded with a Varian Unity Inova 500 MHz spectrometer. NMR spectra were referenced to the appropriate residual solvent signal (δH 2.50, δC 39.5 for DMSO-d6) with chemical shifts reported in δ units (ppm). Microscopic images were observed under a Nikon Diaphot inverted tissue culture microscope with Optronics MicroFire microscope camera.
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8

Metabolomic Profiling of Soursop Kombucha

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The soursop kombucha freeze-dried samples (10 mg) were mixed with 0.375 ml of methanol-D4 and 0.375 ml of KH2PO4 buffer in D2O (pH 6.0) containing 1% TSP as internal standard for relative quantification of the identified metabolites. The mixture was vortexed for 1 min and sonicated at 30°C for 15 min in an ultra-sonicator (Branson, United States). The solution was centrifuged at 13,000 rpm for 10 min, and 600 μl of supernatant was transferred to a nuclear magnetic resonance tube for proton nuclear magnetic resonance (1H-NMR) analysis (Muhialdin et al., 2020b (link)). Spectra were recorded at 25°C with frequency of 500 MHz on a Varian Unity INOVA 500 MHz Spectrometer (Varian Inc., CA). Each sample was subjected to 64 scans and recorded with an acquisition time of 193 s, with a pulse width of 10 ppm and a relaxation delay of 1 s. The spectra were automatically phased and bucketed using Chenomx software, with standard bins of δ 0.05 ranging from region δ 0.50 to 10.00. The analysis was required to remove residual methanol region (δ 3.28–3.33) and water region (δ 4.70–4.96). Two-dimensional 1H–1H J-resolved and was employed to identify metabolites. Partial least square analysis (PLS) and principal component analysis (PCA) were performed using SIMCA-P software (Umetrics AB, Umeå, Sweden).
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9

Spectroscopic Characterization of Natural Compounds

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Optical rotation values were determined on a Rudolph Autopol IV polarimeter in a 100 mm glass microcell. UV spectra were measured in MeOH on a JASCO V-550UV/vis spectrometer with a 0.5 nm resolution, and ECD spectra were recorded on a JASCO J-710 spectropolarimeter. IR spectra (KBr) were recorded on a Nicolet 6700 FT-IR (Thermo Electron Corp.). NMR spectra were acquired from a Varian Unity Inova 500 MHz spectrometer with TMS as the internal standard at the Seoul National University, Seoul, Korea. HRFABMS and ESIMS data were obtained with JEOL JMS-700 and Agilent 6130 Quadrupole mass spectrometer, respectively. Silica gel (Merck, 63–200 μm particle size), and RP-C18 (Merck, 40–63 μm particle size) were used for column chromatography. TLC was carried out with Silica gel 60F254 and RP-C18 F254 plates. Preparative HPLC separation was performed by using a Gilson system with UV detection at 205 and 254 nm and Optima Pak C-18 column (10×250 mm, 10 μm particle size, RS Tech, Daejon, Korea). Analytical grade solvents were used for extraction and isolation.
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10

Spectroscopic Analysis of Organic Compounds

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Melting points were determined in an IA9200 Electrothermal apparatus equipped with a digital thermometer in glass capillary tubes and are uncorrected. Infrared spectra were recorded on a Perkin Elmer 281 FTIR spectrometer in KBr disks or NaCl crystal windows. Elemental analyses for C, H, N, and S were within ±0.4% of theoretical values and were performed on a Carlo Erba Elemental Analyzer Mod. 1108 apparatus. 1H NMR spectra were recorded on a Varian Unity Inova 500 MHz spectrometer in DMSO-d6 solution. Chemical shifts are given in δ values (ppm), using tetramethylsilane (TMS) as the internal standard; coupling constants (J) are given in Hz. Signal multiplicities are characterized as s (singlet), d (doublet), t (triplet), q (quartet), m (multiplet), br (broad). All the synthesized compounds were tested for purity on TLC (aluminum sheet coated with silica gel 60 F254, Merck, Kenilworth, NJ, USA) and visualized by UV (λ = 254 and 366 nm). Purification of synthesized compounds by column chromatography was performed using silica gel 60 (Merck, Kenilworth, NJ, USA). All chemicals and solvents were reagent grade and were purchased from commercial vendors.
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