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Ab109629

Manufactured by Abcam
Sourced in United Kingdom, United States

Ab109629 is a laboratory equipment product offered by Abcam. It is a device designed for specific laboratory applications. The core function of this product is to provide a tool for researchers to conduct their experiments, but a detailed description of its intended use cannot be provided in an unbiased and factual manner without the risk of extrapolation.

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12 protocols using ab109629

1

Protein Extraction and Western Blot Analysis of hASMCs

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To extract proteins from hASMCs, we used RIPA buffer (abs9229, absin, China). After quantification of the extracted proteins, denaturation was performed. The protein was harvested for electrophoresis. After being electroblotted onto a nitrocellulose membrane, 5% BSA was utilized to seal the immunoblot (37°C, 120 min). Afterward, primary antibodies were added (4°C, 12 h). Then, the membrane was immersed in anti-rabbit IgG H&L (1 : 1000) at 37°C for another 1 h. A color reagent (1705061, BIO-RAD, USA) was then added. The blots were observed under an Imaging System (Odyssey CLx, LI-COR, USA). The primary antibodies of Ki67 (1 : 5000), PCNA (1 : 10000), p21 (1 : 10000, ab109520), p27 (1 : 5000, ab32034), FoxO3a (1 : 10000, ab109629), and GAPDH (1 : 10000, ab181602) were bought from Abcam (UK).
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2

β-catenin and FOXO3 Interaction Assay

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The interaction of β-catenin and FOXO3 was determined by co-immunoprecipitation assay (Classic Magnetic co-IP kit, Pierce) as previously described [29 (link)]. HK-2 cells were transfected with β-catenin-4A mutant plasmid transfection and incubated with or without LPS for 30 min. Nuclear fractions were immunoprecipitated with anti-β-catenin antibody (610154, Becton, Dickinson and Company) at 4 °C overnight. Magnetic protein A/G beads were added and incubated at RT for 2 h. Input and immunoprecipitates were immunoblotted with the following antibodies: β-catenin (8480, Cell Signaling Technology, Danvers, MA), FOXO3 (ab109629, Abcam) and GAPDH (ABS16, EMD Millipore).
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3

Western Blot Analysis of Myocardial Proteins

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Myocardial tissues frozen and stored at −80 °C were taken and minced with scissors, to which cold RIPA tissue lysate was added to extract proteins. After determining the protein concentration, equal amounts of protein per group were resolved by 10% SDS-PAGE and transferred to a PVDF membrane (Millipore, Burlington, MA, USA), which was blocked by 5% skim milk for 1 h at room temperature. The PVDF membranes were subsequently incubated with primary antibodies against FOXO3 (1:1,000; ab109629), p-FOXO3 (1:1,000; ab47285), Mst1 (1:1,000; ab51134), Sirt3 (1:1,000; ab217319), AMPK (1:1,000; ab214425), p-AMPK (1:1,000; ab129081) and GAPDH (1:2,500; ab181602) from Abcam overnight at 4 °C. On the next day, PVDF membranes were washed in PBS with 0.1% Tween-20 and then incubated with a peroxidase-conjugated goat anti-rabbit IgG secondary antibody for 2 h at room temperature. Next, the ECL working solution was incubated with the membrane and molecular imaging was performed using a molecular imager. The resulting images were photo analyzed with ImageJ analysis software for the developed protein bands.
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4

Quantitative Western Blot Analysis

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A protease and phosphatase inhibitor cocktail was added to the Radio Immunoprecipitation Assay (RIPA) buffer to lyse the cells. The proteins were electron transferred to an immunoblot polyvinylidene fluoride (PVDF) membrane following SDS-PAGE. Five percent body surface area (BSA) was then used to block membranes in protein quantitative analysis using ImageJ. Primary rabbit antibodies against METTL3 (1: 1000 dilution; ab195352, Abcam, Cambridge, UK), FOXO3a (1: 1000 dilution; ab109629, Abcam), DNMT1 (1: 1000 dilution; ab188453, Abcam), E-cadherin (1: 1000 dilution; ab40772, Abcam), N-cadherin (1: 5000 dilution; ab76011, Abcam), and GAPDH (1: 500 dilution; ab8245, Abcam) were used. Horseradish peroxidase (HRP)-labeled secondary antibody goat anti-rabbit IgG (1: 2000 dilution; ab205718, Abcam) was also used. The ratio of the gray value of the target band to that of the internal reference GAPDH band served as a measure of protein expression.
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5

Western Blot Analysis of Apoptosis Markers

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After treatment, the total protein of AF cells from different samples was extracted by using a Western and IP Cell Lysis Kit (Beyotime). Protein concentrations were measured by a BCA Protein Assay Kit (Beyotime). Equal aliquots of protein from each sample were separated by 12% sodium dodecyl sulfate‐polyacrylamide gel electrophoresis and subsequently transferred to polyvinylidene difluoride membranes (Millipore). Then, the membranes were blocked by 5% nonfat milk in TBST buffer and incubated overnight at 4°C with primary antibodies, including GAPDH (1:5,000, ab9485; Abcam), Bax (ab32503, 1:1,000; Abcam), Bcl‐2 (ab32124, 1:1,000; Abcam), cytochrome c (Cyt c; ab13575, 1:1,000; Abcam), FoxO1a (ab52857, 1:1,000; Abcam), FoxO3 (ab109629, 1:1,000; Abcam), FoxO4 (ab128908, 1:1,000; Abcam), p‐FoxO1a (S256; ab131339, 1:1,000; Abcam), p‐FoxO1a (S319; ab47328, 1:1,000; Abcam), BIM (ab32158, 1:1,000; Abcam), PI3K (ab151549, 1:1,000; Abcam), AKT (ab170463, 1:1,000; Abcam), and phospho‐AKT (p‐AKT; ab81283, 1:1,000; Abcam). Afterwards, the membranes were incubated with secondary antibodies for 1 hr at room temperature. After washing with PBS three times, the bands were observed in a darkroom and quantified using the ImageJ software.
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6

Immunoblotting Analysis of EGFR Signaling Pathway

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Protein lysates were separated on 10% SDS-PAGE gels and electrophoretically transferred to PVDF membranes (Millipore, ISEQ00010). Then, the blots were probed with primary antibodies against EGFR (CST, #4405), p-EGFR (CST, #4407), PI3K (Abcam, ab189403), p-PI3K (Abcam, ab182651), AKT (Abcam, ab8932), p-AKT (Abcam, ab179463), FOXO3a (Abcam, ab109629), p-FOXO3a (Abcam, ab154786), p27 (Abcam, ab32034), p21 (Abcam, ab109502), and alpha tubulin (Abcam, ab52866) overnight at 4°C, followed by incubation with an HRP-labeled horse anti-mouse IgG (CST, #7076) or goat anti-rabbit IgG (CST, #7074) for 1 h at room temperature. Signals were detected using enhanced chemiluminescence (ECL). Alpha tubulin was used as the protein loading control.
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7

Protein Expression Analysis in Cell Lysates

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The cells were treated with the RIPA buffer (Beyotime, Shanghai, China), and the cell lysates were centrifuged at 12000 rpm at 4°C for 10 minutes. The protein concentrations were determined by the BCA kit (Beyotime Inst. Biotech, Beijing, China). Equal amounts of protein (30 μg) were separated on 10% SDS-PAGE and then transferred to PVDF membranes. The membranes were blocked with 5% skim milk for two hours at room temperature (RT) and incubated with the anti-Akt (Abcam, 1 : 1000, ab8805, Shanghai, China), anti-pAkt (Abcam, 1 : 1000, ab38449), anti-FOXO3a (Abcam, 1 : 1000, ab109629), anti pFOXO3a (Abcam, 1 : 1000, ab154786), anti-NF-κB (Abcam, 1 : 1000, ab32360), anti-pNF-κB (Abcam, 1 : 1000, ab76302), anti-Bcl2 (Abcam, 1 : 1000, ab32124), anti-Bax (Abcam, 1: 1000, ab32503), anti-C-Caspase3 (Abcam, 1 : 1000, ab32042), anti-iNOS (Abcam, 1 : 1000, ab178945), anti-COX2 (Abcam, 1 : 1000, ab62331), and anti-GAPDH (Abcam, 1 : 1000, ab ab9485) antibodies overnight at 4°C. Subsequently, the membranes were washed with TBST four times and incubated at RT with the horseradish peroxidase- (HRP-) labeled anti-rabbit secondary antibody (1 : 3000) for one hour. The protein bands were then visualized using enhanced chemiluminescence (ECL; Pierce; Thermo Fisher Scientific, Inc.). The quantification of bands was performed by using ImageJ software.
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8

Western Blot Analysis of FOXO3 Protein

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Cultured cells were resuspended in RIPA buffer (Beyotime, Jiangsu, China) to isolate the total proteins. A bicinchoninic acid protein assay kit (Beyotime) was used to quantify total protein. Equal amounts of protein were separated on 10% SDS–PAGE gels and transferred onto polyvinylidene difluoride membranes. The membranes were blocked with 5% nonfat milk (w/v) for 2 h at room temperature, followed by overnight incubation at 4°C with primary antibodies against FOXO3 (ab109629; dilution 1:800) or GAPDH (ab181602; dilution 1:1000; both from Abcam, Cambridge, MA, USA). Further, horseradish peroxidase-conjugated secondary antibodies (ab205718; dilution 1:5000; Abcam) were added and incubated for 1 h at room temperature. After washing, an enhanced chemiluminescence reagent (Beyotime) was used for signal production. Protein signals were analyzed utilizing Quantity One software version 4.62 (Bio Rad Laboratories, Inc.).
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9

Western Blot Analysis of Inflammatory Markers

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After the cells and tissues were treated, the culture medium was removed. The protein lysis buffer (Roche) separated the total protein. Then, 50 g total protein went through 2 h of electrophoresis (100 V) on 12% polyacrylamide gel. The protein was transferred to polyvinylidene fluoride membranes (Millipore, Bedford, MA, USA). Moreover, 5% skimmed milk powder sealed the membranes for 1 h (RT). TBST flushed them 3 times (10 min each). The primary antibodies we employed for overnight incubation at 4°C encompassed anti-CCL2 (Abcam, ab214819, 1:1,000, MA, USA), anti-CCR2 (Abcam, ab273050, 1:1,000), anti-NF-κB (Abcam, ab32536, 1:1,000), anti-pNF-κB (Abcam, ab76302, 1:1,000), anti-FOXO3a (Abcam, ab109629, 1:1,000), anti-FOXO3a (Abcam, ab154786, 1:1,000), anti-pFOXO3a (Abcam, ab154786, 1:1,000), anti-Bad (Abcam, ab32445, 1:1,000), anti-Bax (Abcam, ab32503, 1:1,000), anti-cleaved caspase-3 (Abcam, ab13585, 1:1,000), anti-iNOS (Abcam, ab178945, 1:1,000), anti-COX2 (Abcam, ab179800, 1:1,000), and anti-GAPDH (Abcam, ab9485, 1:1,000). Subsequent to a wash in TBST, the anti-rabbit secondary antibody labeled by horseradish peroxidase (concentration: 1:3,000) was given for 1-h incubation at RT. TBST rinsed the membranes 3 times (10 min each). In the end, color and image development was done with the use of the reagent of Western blot (Invitrogen). Image J analyzed each protein's gray value.
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10

Chondrocyte Protein Expression Analysis

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Chondrocytes were lysed with immunoprecipitation lysis buffer (Sigma‐Aldrich, MO) to extract total protein. BCA Protein Assay Kit (P0010, Beyotime, China) was used for the quantification of total protein. Protein extracts were subjected to 10% SDS‐PAGE, and transferred to polyvinylidene fluoride membranes. After blockade of 3% BSA, the membranes were incubated with primary antibodies FoxO3 (ab109629, Abcam, UK, 1:1000), COL2A1 (NB‐600‐844, Novus, MO, 1:1000), Sox9 (ab185966, Abcam, UK, 1:5000), ACAN (A11691, ABclonal, China, 1:500), ADAMTS5 (ab41037, Abcam, UK, 1:1000), Runx2 (ab236639, Abcam, UK, 1:1000), Bcl‐2 (ab32124, Abcam, UK, 1:1000), Bax (ab32503, Abcam, UK, 1:1000), PCNA (ab92552, Abcam, UK, 1:1000), and GAPDH (NB100‐56875, Novus, MO, 1:5000) at 4°C for 12 hours, and incubated with HRP goat anti‐rabbit IgG (AS014, ABclonal, China, 1:2000). The membrane was detected using BeyoECL Star (P0018AS, Beyotime, China). GAPDH was used as the internal reference.
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