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Eclipse fluorescence microscope

Manufactured by Nikon
Sourced in Japan, United States

The Eclipse fluorescence microscope is a laboratory instrument designed for the observation and analysis of fluorescently labeled samples. It utilizes specialized illumination and detection systems to produce high-contrast images of fluorescent specimens.

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72 protocols using eclipse fluorescence microscope

1

BrdU Incorporation Assay for Proliferating Cells

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Cells, seeded on cover glasses in 12-well plates, were treated with 10µM BrdU for the last 18 h of culture. Next, they were washed with PBS and fixated in ice-cold 70% ethanol. Cells were washed with 0.5% TritonX-100 (Sigma-Aldrich) in PBS, incubated in 2N HCl for 30 min, washed twice with PBS, incubated for 1 min in 0.1 M borax solution (Sigma-Aldrich), washed twice in PBS again and incubated with primary anti-BrdU antibody (Beckton Dickinson) 1:120 in 1% BSA 0.5% Tween-20 solution in PBS for 1 h. Then, cells were washed twice with 0.5% Tween-20 in PBS and incubated with secondary antibody conjugated to fluorochrome (Thermo Fisher Scientific). Cells were washed with 0.5% Tween-20 in PBS, stained with 1 M DAPI for 15 min, washed again and mounted on a microscope slide with FluoroMount Medium (Thermo Fisher Scientific). Specimens were examined under an Eclipse fluorescence microscope (Nikon, Tokyo, Japan). Images were analyzed using ImageJ program. Number of BrdU-positive cells was calculated relative to the number of all cells (based on DAPI staining).
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2

EGF-Induced Actin Remodeling in MDA-MB-231 Cells

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MDA-MB-231 cells were plated on glass coverslips and transfected with the indicated plasmids. After 48 h, cells were starved for 18 h in serum-free medium supplemented with 0.1% BSA and stimulated with 5 nM EGF for 5 min at 37°C. Cells were then fixed with 4% paraformaldehyde, stained with rhodamine phalloidin, and imaged using a 1.4 N.A. 60× objective and a Nikon Eclipse fluorescence microscope.
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3

Comet Assay for DNA Damage Detection

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A comet assay was performed using a DNA Damage Detection Kit (Keygen, China). The cells were treated in accordance with the experimental design. Cells were harvested and suspended in PBS containing 0.7% low-melting agarose and layered onto adhesive microscope slides previously covered with 1% normal-melting agarose. The cells were dipped in a specific lysed buffer at 4 °C for 1–2 h. Next, the DNA was uncoiled and unwound in an alkalescent electrophoresis buffer for 30 min. Electrophoresis was performed at 25 V for 30 min. After neutralization with 0.4 mM Tris-HCl buffer (pH 7.5) for three times, the cells were stained with PI solution for 10 min in a dark room. The slides were examined with an Eclipse fluorescence microscope (Nikon, Tokyo, Japan).
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4

Cytotoxicity Screening of Chemotherapeutics

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The following compounds were
used: methotrexate (MTX, Sigma Aldrich), paclitaxel (PTX, Toronto
Research Chemicals, TRC), 9,10-anthracenediyl-bis(methylene) dimalonic
acid (ABMA, Sigma Aldrich), 2,6-dichlorophenolindophenol (DCPIP, Sigma
Aldrich), 18F-FDG (UNAM, Mexico), Roswell Park Memorial
Institute medium (RPMI, 1640, Sigma Aldrich), bovine fetal serum (BFS,
Gibco), amphotericin B (Sigma Aldrich), penicillin–streptomycin
(Gibco), sodium 3′-[1-[(phenylamino)-carbony]-3,4-tetrazolium]-bis(4-methoxy-6-nitro)
benzene-sulfonic acid hydrate (XTT kit, Roche), 4′,6-diamidine-2′-phenylindole
dihydrochloride (DAPI, Sigma, Aldrich), and CellRox Green (Fisher
Scientific).
A GENESYS 50 UV–vis spectrophotometer (Thermo
Fisher Scientific) with 2 nm resolution was used with 250 μL
quartz cells (1 cm optical path). We also used a UV–vis Epoch
microplate reader (Biotek) and an Eclipse fluorescence microscope
(Nikon).
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5

Comet Assay for DNA Damage Analysis

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The induction of DNA damage was analysed using comet assay [21 (link),22 (link),23 (link)]. After treatment, the cells were resuspended in 0.75% low-melting-point agarose and spread onto microscope slides pre-coated with 0.5% normal-melting-point agarose. The slides were immediately put on ice, and the cells were lysed in ice-cold lysis buffer (2.5 M NaCl, 100 mM EDTA, 1% Triton X-100, 10 mM Tris, pH 10) for 1 h. The slides were incubated in an ice-cold developing solution (300 mM NaOH, 1 mM EDTA, pH > 13) for 20 min, followed by electrophoresis in ice-cold electrophoresis solution (30 mM NaOH, 1 mM EDTA, pH > 13) for 20 min at an electric field strength of 0.73 V/cm (32 mA). Then, the slides were washed with H2O and stained with 4 µg/mL DAPI. The comets were observed at 200× magnification in an Eclipse fluorescence microscope (Nikon, Tokyo, Japan) attached to a COHU 4910 video camera (Cohu, San Diego, CA, USA) equipped with a UV-1 filter block (an excitation filter of 359 nm and a barrier filter of 461 nm) and connected to a personal computer-based image-analysis system Lucia-Comet version 4.51 (Laboratory Imaging, Prague, Czech Republic). One hundred comets were randomly selected from each sample, and the percentage of DNA in the tail (tail DNA (%)) was measured.
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6

Fluorescence Microscopy Image Processing

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Images were acquired using a Nikon Eclipse fluorescence microscope and processed with ImageJ. First, pictures were converted to 8 bit. A POV was then selected for each picture (398×926 pix), which covers >90% of entire view of each channel. The POV was then cropped using ImageJ. The images of CD31 and DAPI staining were then overlaid through image-J (image - color merge channels). CD31 images were set to be green and DAPI images were set to be blue. After merging the green and blue images, the green color balance of all images was post polished modified through ImageJ (image - adjust - color balance); maximum intensity of all images was adjusted down to 152 rather than the full 255.
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7

Histological Validation of Implantation Sites

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Histological analysis of implantation sites was performed at the conclusion of experiments to confirm recording sites used for neurophysiological analysis (Figure S4A). Animals were perfused with 4% paraformaldehyde, and brains were harvested and stored for 24 hours in PFA. Brains were cryoprotected with sucrose and frozen in OCT compound, and stored at −80C. Brains were sliced at 35 µm and stained using NeuroTrace fluorescent Nissl Stain (N21480, ThermoFisher Scientific, Waltham, MA). Floating sections were washed 3 times in PBST (0.1%). Sections were incubated in PBS with Nissl antibody (1:300) for 10 mins at room temperature and washed once in PBST (0.1%) and twice in PBS with azide (0.01% NaN3), after which the entire brain was mounted. Images were obtained using a Nikon Eclipse fluorescence microscope at 4× and 10× magnifications. Only animals in which all eight implantation sites were confirmed were included in the analysis. Multiple animals were removed due to tissue destruction during histological analysis, in which implantation could not be confirmed.
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8

Visualizing PTH1R Receptor Trafficking

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Gs22a cells in a six-well plate were transiently transfected with PTH1R-WT, PTH1R-R485X, PTH1R-E35K, PTH1R-Y132S, or PTH1R-H223R, each with an extracellular HA-tag, and 24 hours later were reseeded in a six-well plate onto glass coverslips, and processed for imaging at 48 h-post transfection. To visualize receptors on the surface of non-stimulated cells, cells were fixed with 3.7% paraformaldehyde for 5 min at room temperature, incubated for 1 hour at room temperature with anti-HA mouse monoclonal primary antibody (anti-HA.11, BioLegend, Cat. No. 901513), rinsed, incubated for 1 h at room temperature with a goat-anti-mouse IgG secondary antibody poly-conjugated to HRP (poly-HRP-anti-mIgG; ThermoFisher Scientific, Cat. No. 32230), stained with Tyramide-Alexafluor-594 (Tyr594; Tyramide SuperBoost Kit ThermoFisher Scientific, Cat. No. B4092), then mounted on a glass microscope slide in Vectashield containing DAPI and imaged using a Nikon Eclipse fluorescence microscope at 400X magnification.
To visualize receptors remaining on the cell surface after stimulation with ligand, cells were first stimulated with PTH(1-34)FAM (30 nM) for 30 min at room temperature, then rinsed, fixed, and immuno-stained using anti-HA.11 primary antibody, poly-HRP-anti-mIgG secondary antibody and the Tyr594 SuperBoost reagents, as described above for surface receptors in non-stimulated cells.
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9

Immunocytochemical Analysis of Cardiomyocytes

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Cardiomyocytes at 2 DIV were fixed with 4% paraformaldehyde for 15 min and then permeabilized with 0.25% Triton™ X-100 for 15 min under gentle shaking. After blocking with 5% goat serum in PBS for 30 min, cells were incubated with anti-cTnT (1:400) antibody overnight at 4 °C. Cells were then incubated with Alexa Fluor® 488-conjugated goat anti-rabbit (1:500) secondary antibody for 2 h at RT. After aspirating secondary antibody, a concentration of 2 μg/mL of Hoechst 33342 was added to stain the nuclei. Images were taken using a Nikon eclipse fluorescence microscope using FITC filter and DAPI filter.
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10

Lung Tissue Histology and Cell Assays

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Lung tissue histology and immunohistochemistry were performed using previously described protocols (LaCanna et al., 2019 (link)). Cells cultures were prepared for staining by fixing in 2% paraformaldehyde, permeabilizing in 0.2% Triton-X and blocked using 1% bovine serum albumin. Cell proliferation was measured using Click-iT® EdU (5-ethynyl-2′-deoxyuridine) Alexa Fluor® Imaging Kit (Thermo). Cell apoptosis was measured using In Situ Cell Death Detection Kit, TMR red from Roche. Zeiss LSM 710 confocal microscope, a Nikon eclipse fluorescence microscope, and ImageJ/FIJI software were used to capture and analyze images. Quantitation of cell numbers was completed using at least 10 randomly selected images per animal with at least 50 cells per image.
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