The largest database of trusted experimental protocols

18 protocols using anti rabbit igg

1

Western Blot Analysis of Stem Cell Markers

Check if the same lab product or an alternative is used in the 5 most similar protocols
Undifferentiated and differentiated ESCs were lysed in radioimmunoprecipitation assay buffer containing 150 mM sodium chloride, 1% NP-40, 0.5% sodium deoxycholate, 0.1% SDS, 50 mM Tris, pH 8.0, and protease inhibitor cocktail (Sigma–Aldrich), and analyzed by Western blot. The following primary antibodies were used: rabbit anti-Yap (1:1000; D8H1X; Cell Signaling Technology), rabbit anti-Dnmt3l (1:1000; E1Y7Q; Cell Signaling Technology), mouse anti-Vinculin (1:1000; G11; Santa Cruz Biotechnology), and mouse anti-Flag (1:2000; Sigma). Western blots were developed with an ECL system (BioRad) using the following horseradish peroxidase–conjugated antibodies: anti-rabbit IgG (1:10,000), antimouse IgG (1:5000; both from Amersham Pharmacia Biotech).
+ Open protocol
+ Expand
2

Protein Expression Analysis of Stem Cells

Check if the same lab product or an alternative is used in the 5 most similar protocols
Undifferentiated and differentiated ESCs were lysed in a buffer containing 1 mM EDTA, 50 mM Tris-HCl (pH 7.5), 70 mM NaCl, 1 % Triton, and protease inhibitor cocktail (Sigma), and analyzed by western blot. The following primary antibodies were used: mouse Oct3/4 (1:1000 Santa Cruz Biotechnology, #sc-5279), rabbit Nanog (1:1000 Calbiochem-EMD Biosciences, #SC1000), mouse GAPDH (1:1000 Santa Cruz Biotechnology, #sc-32233), goat Sox1 (1:100 Santa Cruz Biotechnology, #sc-17318), rabbit Otx2 (1:500 Abcam, #ab114138), rabbit HMGA2 (1:500 Cell Signaling, #5269), and rabbit HMGA2 (1:500). GAPDH was used as an internal control. Antibody protein complexes were detected by HRP-conjugated antibodies (Anti-rabbit IgG, 1:10000, Amersham Pharmacia, #NA934V; Anti-mouse IgG, 1:5000, Amersham Pharmacia, #NA931V; Anti-goat IgG, 1:20000, Sigma-Aldrich, #A5420) and ECL (Amersham Pharmacia).
+ Open protocol
+ Expand
3

Antibody Sources for Drosophila Chromatin Factors

Check if the same lab product or an alternative is used in the 5 most similar protocols
dCoREST (G. Mandel), dLSD1 (dSu(var)3–3; G. Reuter) and dG9a (M. Yamaguchi) antibodies were generous gifts. Rabbit polyclonal anti-dL(3)mbt, anti-dLint-1, anti-dMi-2 (anti-dMi2-Nterm), anti-dRpd3 and anti-MstF77 antibodies have been previously described (15 (link),19 (link)). Anti-beta-Tubulin (clone KMX-1), anti-FLAG rabbit polyclonal antibody and anti-FLAG M2 agarose were purchased from Millipore and Sigma Aldrich, respectively. Anti-GFP was purchased from Chromotek.
HRP linked anti-Mouse IgG (Amersham, NA931), anti-rabbit IgG (Amersham, NA934) or anti-rat IgG (Invitrogen, 31470) secondary antibodies were used to visualize western blot signals by chemiluminescence using the Immobilon Western Chemiluminescence HRP substrate (Millipore, WBKLS0500).
+ Open protocol
+ Expand
4

Western Blot Analysis of pSMAD

Check if the same lab product or an alternative is used in the 5 most similar protocols
Forty to 50 μg of protein per lane were loaded on 8% to 10% SDS-PAGE then transferred to nitrocellulose membrane for western analysis. Membranes were blocked in 5% blocking buffer for 15 to 30 minutes. Antibodies detecting total SMAD (tSMAD) or pSMAD were diluted in blocking buffer (1:2000 tSMAD, Millipore anti-SMAD2/3 #07-408; 1:500 pSMAD, anti-pSMAD2 antibody, #04-953). Membranes were incubated with the primary antibody at 4°C overnight with continuous shaking. Membranes were washed 2 to 3 times for 15 minutes in wash buffer and then incubated in secondary antibody (1:1000-1:2000 in the blocking buffer, Amersham anti-rabbit IgG; #NA-934V) for one to two hours with continuous shaking. Membranes were washed three times for >20 minutes in wash buffer. Signal was detected with Supersignal WestPico Luminol/enhance solution (#1856136 PIERCE) as directed in the package insert. Band intensity was digitally captured by Lumi-Imager (Roche). Curve fitting utilized a four-parameter logistic model and absolute IC50 values were reported.
+ Open protocol
+ Expand
5

Western Blot Protocol for Protein Analysis

Check if the same lab product or an alternative is used in the 5 most similar protocols
Western blots were performed as described previously59 (link). In brief, cells were lysed in NuPage LDS sample buffer (Invitrogen, NP0007) at 1 × 104 cells per µl. Proteins were resolved using NuPage Bis-Tris gel electrophoresis (Invitrogen, NP0343, NP0321 or WG1402) and transferred to nitrocellulose membranes (Amersham, 10600037). Secondary antibodies were peroxidase-conjugated anti-mouse IgG (Amersham, NXA931V) or anti-rabbit IgG (Amersham, NA934V). Peroxidase activity was detected using an ECL kit (Prometheus, 20-302B) and the Syngene G-Box imager. Primary antibodies are listed below.
+ Open protocol
+ Expand
6

Cadherin Expression and Signaling Pathways

Check if the same lab product or an alternative is used in the 5 most similar protocols
BMP7 was from R&D systems (Minneapolis, MI). Antibodies against phosphorylated p38 (P‐p38) and phosphorylated ERK (P‐ERK) were from Cell Signaling Technology (Beverly, MA). Anti‐p38 antibody (C‐20) was from Santa Cruz Biotechnology (Santa Cruz, CA). Anti‐ERK antibody (Erk1/2‐CT, rabbit polyclonal IgG) was from Upstate Biotechnology (Lake Placid, NY). Mouse and rabbit anti‐cadherin‐11 antibodies were from Zymed Laboratories (South San Francisco, CA). Anti‐uvomorulin/E‐cadherin antibody was from Sigma (Saint Louis, MO), and anti‐K‐cadherin antibody (cadherin 6, sc‐31024, sc‐59974) was from Santa Cruz Biotechnology (Santa Cruz, CA). Horseradish peroxidase‐conjugated anti‐mouse IgG and anti‐rabbit IgG were from Amersham (Buckinghamshire, UK). A p38 inhibitor SB203580 and a MEK inhibitor PD98059 were from Carbiochem‐Novabiochem (La Jolla, CA). DMEM, FBS, penicillin, streptomycin, Hanks' balanced salt solution, and trypsin‐EDTA were from Gibco Laboratories (Grand Island, NY).
+ Open protocol
+ Expand
7

Regulation of Osteogenic Differentiation

Check if the same lab product or an alternative is used in the 5 most similar protocols
3, 4’-DHF was purchased from Indofine Chemical Inc. (Hillsborough, NJ, USA) and dissolved in dimethyl sulfoxide (DMSO, Sigma Aldrich, St. Louis, MO, USA). The ROS scavenger, NAC, and the MEK kinase inhibitor, U0126, were obtained from Calbiochem (San Diego, CA, USA). Dexamethasone, β-glycerophosphate, ascorbic acid, alkaline phosphatase kits, and alizarin red s were purchased from Sigma-Aldrich (St. Louis, MO, USA). The reagent for measuring intracellular ROS, 2’, 7’-dichlorodi-hydrofluorescein diacetate (H2DCFDA), was obtained from Molecular Probes (Eugene, OR, USA). Primary antibodies for β-actin, phospho-ERK, ERK, phospho-AKT, and AKT were purchased from Santa Cruz Biotechnology (Dallas, TX, USA), and the peroxidase conjugated secondary antibodies, anti-mouse IgG, anti-rabbit IgG, anti-goat IgG, were obtained from Amersham Bioscience (Piscataway, NJ, USA).
+ Open protocol
+ Expand
8

Whole-Cell Lysis and Immunoblotting for AKT

Check if the same lab product or an alternative is used in the 5 most similar protocols
To obtain the whole-cell lysates from the cells, the cells were washed in PBS and then lysed in 10 mM Tris-HCl (pH 7.5), 150 mM NaCl, 1 mM EDTA, 1% Triton X-100, 1 mM phenylmethylsulfonyl chloride/isopropanol, and 1 g/ml pepstatin/methanol for 60 min on ice. During incubation, cells were homogenized every 30 minutes using disposable pestles. After centrifugation for 10 min at 14000rpm, the protein was obtained and quantified using BCA Protein Assay kit (ThermoFischer Scientific, Waltham, MA). For each sample, 20ug of total protein were then separated by 10% SDS-PAGE and electroblotted on polyvinylidene difluoride membranes (Bio-Rad, Hercules, CA). After blocking for 1 h in PBS supplement with 5% skim milk, immunodetection of AKT and p-AKT were performed with anti-rabbit monoclonal antibody (1:1000) or antirabbit polyclonal antibody (1:2000;). Anti-rabbit IgG (1:3000) and enhanced chemiluminescence (Amersham Pharmacia Biotech, Aylesbury, United Kingdom) were used for detection.
+ Open protocol
+ Expand
9

Proteasome Inhibitor Modulates Irradiation-Induced Fra-1

Check if the same lab product or an alternative is used in the 5 most similar protocols
Non-irradiated or irradiated cells were trypsinized and counted immediately after irradiation, and the same number of non-irradiated and irradiated cells was plated onto dishes containing fresh media. Two days after irradiation, cells were lysed with RIPA lysis buffer containing PMSF and sodium orthovanadate (Santa Cruz Biotechnology, Dalla, TX, USA) and then used for the western blotting.
For the proteasome inhibitor treatment, two patterns of schedule were used: 1) 10 nM of epoxomicin (proteasome inhibitor; Peptide Institute Inc., Osaka, Japan) was added to the culture media immediately before cell irradiation, and the cells were cultured for 48 h in a 5% CO2 incubator at 37°C and then lysed, or 2) 10 nM of epoxomicin was added to the culture media 48 h after irradiation, and the cells were cultured in a 5% CO2 incubator at 37°C for 24 h. The cells were then lysed with RIPA lysis buffer and used for the western blotting.
Immunoblotting was performed as previously described (37 (link)). Primary antibodies for human Fra-1 (Santa Cruz Biotechnology) and GAPDH (Trevigen, Bristol, UK) with horseradish peroxidase-conjugated anti-mouse IgG or anti-rabbit IgG (Amersham Biosciences, Buckinghamshire, UK) were used for this study. Protein bands were detected by enhanced chemiluminescence and imaged using a Lumino image analyzer (LAS4000; Fujifilm, Tokyo, Japan).
+ Open protocol
+ Expand
10

Immunoblotting Experimental Protocol

Check if the same lab product or an alternative is used in the 5 most similar protocols
Immunoblotting was carried out as described previously.14 (link) All antibodies were used at dilutions of 1:1000, with the exception of anti-β-actin antibody (1:5000). For immunodetection, secondary anti-rabbit IgG or anti-mouse IgG (Amersham, Piscataway, NJ, USA) antibodies were used at a dilution of 1:5000. Antibody binding was detected using the ECL system (Amersham).
+ Open protocol
+ Expand

About PubCompare

Our mission is to provide scientists with the largest repository of trustworthy protocols and intelligent analytical tools, thereby offering them extensive information to design robust protocols aimed at minimizing the risk of failures.

We believe that the most crucial aspect is to grant scientists access to a wide range of reliable sources and new useful tools that surpass human capabilities.

However, we trust in allowing scientists to determine how to construct their own protocols based on this information, as they are the experts in their field.

Ready to get started?

Sign up for free.
Registration takes 20 seconds.
Available from any computer
No download required

Sign up now

Revolutionizing how scientists
search and build protocols!