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147 protocols using ferrostatin 1

1

Human Osteosarcoma Cell Lines and Inhibitor Treatments

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Human osteosarcoma cell lines – U2OS, MG63 and HOS – were purchased from ‘Biological Resource Center ICLC Cell bank, Core facility IRCCS Ospedale Policlinico San Martino, Genova (IT)’, were maintained in Dulbecco’s modified Eagle’s medium (DMEM, EuroClone), supplemented with 10% fetal bovine serum (FBS, EuroClone), 2 mM L-glutamine (Merck), 1% penicillin/streptomycin (Merck), at 37 °C in a humidified incubator with 5% CO2. Mycoplasma testing was routinely performed each month by using the Venor®GeM Classic (Minerva-BiolAbs;Berlin, GE)
Cells were treated with 0.5 µM RSL3 (Merck), 10 µM Ferrostatin-1 (Merck), 6 µM iFSP1 (BioVision), 50 nM Brustatol (Cayman Chemicals); 10 µM MPA (Merck), or 10 µM Pifithrin (Merck), as indicated.
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2

Small Molecule Compound Screening

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Erastin (S7242), Z-VAD-FMK (S7023), 3-methyladenine (S2767) and disulfiram (S1680) were obtained from Selleck. Ferrostatin-1 (SML0583-5MG) was obtained from Merck.
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3

Modulation of Cell Death Pathways

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SFN, necrostatin-1, ferrostatin-1, and N-acetylcysteine were purchased from Merck Millipore (Darmstadt, Germany); N-Benzyloxycarbonyl-Val-Ala-Asp (O-Me) fluoromethyl ketone (Z-VAD-FMK) was obtained from Calbiochem, EMD Millipore Corp. (Billerica, MA, USA); necrosulfonamide was purchased from Tocris Bioscience (Bristol, UK); (1S,3R)-RSL3 (RSL3) and SM164 were obtained from Cayman Chemical (Ann Arbor, MI, USA); tumor necrosis factor α (TNF-α) was purchased from PeproTech GmbH (Hamburg, Germany).
Exponentially growing cells were used for all experiments. Cells were treated with increasing concentrations of SFN (0–50 μM) for 1, 3, 6, 9, 16, or 24 h, depending on the experimental conditions. To evaluate the induction of non-canonical cell death pathways, cells were pre-treated for 1 h with different chemical inhibitors and then treated with SFN for 24 h. The following inhibitors were used: the pan-caspase inhibitor Z-VAD-FMK (50 μM), the RIP1 inhibitor necrostatin-1 (50 μM), the MLKL inhibitor necrosulfonamide (1 μM), and the inhibitor of ROS generation and lipid peroxidation ferrostatin-1 (1 μM), to inhibit apoptosis, necroptosis, and ferroptosis, respectively. TNF-α (50 ng/mL) + SM164 (500 nM) + Z-VAD-FMK (50 μM) were used as positive control for necroptosis induction. RSL3 (0.2 μM) was used as a positive control for ferroptosis induction.
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4

Investigating Cell Line Responses to Small Molecules

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Huh7 and SK-HEP-1 cell lines were obtained from the Korean Cell Line Bank (Seoul, Korea). Dulbecco’s modified Eagle medium, RPMI-1640 medium, fetal bovine serum, L-glutamine, penicillin, and streptomycin were purchased from Thermo Fisher Scientific (Waltham, MA, USA). Sulfasalazine, ferrostatin-1, necrostatin-1, deferoxamine, and 1-methyl-D-tryptophan were purchased from Merck KGaA (Darmstadt, Germany). Erastin, RSL3, necrostatin-1s, and GSK2982772 and Z-VAD-FMK were obtained from Selleckchem (Houston, TX, USA). TNFα was supplied from PeproTech (Cranbury, NJ, USA) and SM164 was obtained from AdooQ Bioscience (Irvine, CA, USA).
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5

Ferroptosis Modulation in Cancer

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BRAF inhibitor vemurafenib (PLX4032) was purchased from Selleck Chemicals (Houston, TX), BGB324 (R428, bemcentinib) was kindly provided by BergenBio (Bergen, Norway). Ferroptosis inhibitor ferrostatin-1 and inducer RSL3 were purchased from Merck Life Science (Kenilworth, NJ). Bafilomycin A1 was from Enzo (Novi, MI). All drugs were dissolved in DMSO. For animal studies, the drugs were further diluted in 0.5% methylcellulose (Sigma-Aldrich).
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6

Apoptosis and Necroptosis Signaling Assays

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The following chemicals were used: PI, Ferrostatin-1, Erastin, Thapsigargin, and DMSO (Merck); Bortezomib (LC Laboratories); TNF-related apoptosis-inducing ligand (TRAIL; ref. 24) ; Boc-D-fmk (Abcam); Necrostatin-1 (Enzo Life Sciences); 17-(Allylamino)-17demethoxygeldanamycin (17-AAG; Cayman Chemicals). Immunoblotting was performed as described previously (25) . After blocking for 1 hour at room temperature, membranes were incubated with the primary antibodies. The primary antibodies used were anti-Actin and NOXA/PMAIP1 (Merck), DIABLO/SMAC (26) , HDAC4 (27) , Ubiquitin (Covance), eIF2a, and p-eIF2a (Ser51; Cell Signaling Technology). Next, membranes were incubated with the proper horseradish peroxidase-conjugated secondary antibody for 1 hour at room temperature (Merck). Blots were developed using Super Signal West Dura (Pierce Waltham).
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7

Modulating Ferroptosis in Myotubes

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C2C12 myoblasts and HEK293T cells were obtained and authenticated by ATCC, and tested negative for mycoplasma contamination. Both cell lines were grown and maintained in high-glucose Dulbecco’s modified Eagle’s medium (DMEM), with 10% fetal bovine serum, and 0.1% penicillin/streptomycin. Once 90–100% confluent, C2C12 cells were differentiated into myotubes with low-glucose DMEM, with L-glutamine and 110 mg/L sodium pyruvate, supplemented with 2% horse serum, and 0.1% penicillin-streptomycin. For experiments with erastin (E7781, MilliporeSigma), ferrostatin-1 (SML0583, MilliporeSigma), and RSL3 (SML2234, MilliporeSigma), C2C12 myotubes were incubated with either 10 μM erastin/10 µM ferrostatin-1/5 μM RSL3/or equal-volume DMSO directly dissolved into medium. For experiments with L-carnosine (C9625, MilliporeSigma), and N-acetylcarnosine (18817, Cayman), C2C12 myotubes were incubated with 10 mM of L-carnosine/N-acetylcarnosine directly dissolved into medium.
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8

Ferroptosis Assay Reagents and Antibodies

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Cetrimide agar (MilliporeSigma, 22470), lysogeny broth (LB) (MilliporeSigma, L3152), baicalein (MilliporeSigma, 465119), ferrostatin-1 (MilliporeSigma, SML0583), NADPH (MilliporeSigma), glutathione peroxidase (MilliporeSigma G6137), cumene hydroperoxide (MilliporeSigma C0524), Thiol Fluorescent Probe IV (MilliporeSigma 595504), Pierce BCA Protein Assay Kit (Thermo Fisher Scientific, 23225), anti-GPx4 (rabbit monoclonal, Abcam, ab125066), anti–15-LOX (rabbit polyclonal, Abcam, ab23691), anti-actin (mouse monoclonal, MilliporeSigma, A3854, clone AC-15), and secondary antibody, goat anti-rabbit (MilliporeSigma, A0545) were used. pLoxA antibody was purified from rabbit whole blood by Pocono Rabbit Farm and Laboratory as described previously (12 (link), 27 (link)).
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9

Ferroptosis Inhibition and Lipid Peroxidation

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Freshly harvested splenocytes were treated with 1 μM BODIPY-C11 (Thermo Fisher) in RPMI 1640 media (Corning) supplemented with 10% FBS, penicillin and streptomycin at 37 °C for 1 hour. Cells were then washed and surface stained for CD4, CD44, CD62L and Fixable Viability Dye as described above. To examine the impact of ferroptosis inhibitors on lipid peroxidation, total splenocytes were incubated with 100 μM alpha-Tocopherol (Millipore Sigma) and/or 10 μM Ferrostatin-1 (Millipore Sigma) for 15 min at 37 °C followed by staining with 1μM BODIPY-C11 for 1 hour. Cells were then washed and surface stained as described above.
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10

Ferroptosis Inhibition After SCI

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After surgery, rats were randomly assigned into the following groups: i) Sham group. Rats (n=10) were received laminectomy without contusion. Then rats were intra-spinal cord microinjected with the same volume of 9% NaCl (containing 0.1% DMSO), equivalently to the volume of ferrostatin-1 in SCI+ferrostatin-1 group, using the same method.
ii) SCI group. Rats (n=15) were received laminectomy with contusion. Then rats were intra-spinal cord microinjected with the same volume of 9% NaCl (containing 0.1% DMSO), equivalently to the volume of ferrostatin-1 in SCI+ferrostatin-1 group.
iii) SCI + ferrostatin-1 group. Rats (n=15) were received laminectomy with contusion. Four hours after surgery, ferrostatin-1 (0.7 mg/kg, Sigma-Aldrich, Munich, Germany), which was diluted in 0.9% NaCl after dissolved in DMSO, was microinjected into the dorsal spinal cord 2 mm rostrally and 2 mm caudally to the injury site at a depth of 1.2 mm and 0.75 mm laterally from midline at a rate of 1 µl/min. The needle was left in position for a further 2 min before being slowly withdrawn. A total volume of 10 µl ferrostatin-1 was injected. The second treatment was on the second day after SCI.
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