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8 protocols using aβ42 peptide

1

Preparation of Amyloid-Beta Monomers

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Synthetic human Aβ42 peptide was purchased as a trifluoroacetate salt (Bachem, Weil am Rhein, Germany). For disintegration of preexisting aggregates, the peptide was predissolved in 100% hexafluoroisopropanol (HFIP) at 1 mg/mL and incubated overnight at room temperature. The solution was then divided into aliquots, lyophilized and stored at -8000B0030C until required. Aβ42 was dissolved at pH 10 for analysis of a monomeric sample. To initiate aggregation the Aβ42 peptide was dissolved at concentrations from 10 to 240 μM in 10 mM NaPi buffer (6.2 mM sodium dihydrogen phosphate, 3.8 mM disodium hydrogen phosphate, pH 7.4).
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2

Preparation of Amyloid-β42 Fibrils

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The Aβ42 fibrils were prepared as previously described [20 (link)]. The lyophilized Aβ42 peptide (Bachem, Bubendorf, Switzerland) was dissolved in 100% hexafluoro-2-isopropanol (HFIP) to 1.0  mM and the solvent was evaporated. Aβ42 fibrils were prepared by suspending the peptide at the same concentration in 50 mM NaOH and diluting this solution in PBS to a final Aβ42 concentration of 25 μM. Then, the sample was centrifuged at 22,000 rcf (Relative Centrifugal Force) for 30 min, the pellet discarded and the supernatant incubated at 25 °C without agitation for 72 h.
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3

Preparation of Aβ42 Oligomers

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Aβ42 peptide was obtained from BACHEM (Heidelberg, Germany). The oligomerization procedure was performed as previously described [33 (link), 34 (link)]. Briefly, solid Aβ1-42 peptide was dissolved in 1,1,1,3,3,3-hexafluoro-2-propanol (HFIP) to a final concentration of 1 mM. This solution was incubated for 60 min at room temperature, the HFIP was evaporated overnight, and DMSO was added to prepare a 5 mM solution. Then, by adding F12 medium (MF12), a new solution of Aβ42 was obtained with a final concentration of 100 μM (100 pmoles/μL). This solution was incubated for 24 h at 5°C and then centrifuged at 14,000 ×g at 4°C for 10 min. Aβ oligomers found in the supernatant were collected and maintained at 4°C until being used for experiments. Previous characterization of our solution indicates that it contains a mixture of Aβ aggregates, with hexamers as the main Aβ oligomeric form present [34 (link)].
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4

Preparation of Amyloid Beta-42 Fibrils

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Aβ-42 peptide (Bachem, Bubendorf, Switzerland) was dissolved in 100% hexafluoroisopropanol (HFIP) to a final concentration of 1 mM. The solution was aliquoted, HFIP was evaporated and the resulting pellets were stored at −20 °C until needed. These aliquots were stable for at least three months. To generate amyloid aggregates, Aβ-42 peptide was dissolved to a 30 μM concentration in 20 mM sodium phosphate buffer (PBS), pH 7.4, at 25 °C. The samples were sonicated for 15 min and then centrifuged at 14,000× g for 15 min at 4 °C. The clear supernatant was collected, and the peptide concentration was checked by evaluating the absorbance of the resulting solution by means of a double-beam Lambda-20 spectrophotometer (Perkin Elmer Life Sciences, Norwalk, CT, USA) (ε280 = 1490 mol−1 cm−1) and adjusted to a final concentration of 25 μM. Enriched solutions of fibrillar Aβ-42 (Fib) were collected after 72 h of incubation of the supernatant at room temperature (RT).
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5

Aβ42 ELISA Immunoassay Protocol

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Purified Aβ42 peptide used as a standard in ELISA was obtained from Bachem (King of Prussia, PA). The purity of peptide was between 92 to 95% as examined by high performance liquid chromatography. A vial containing one mg of peptide was solubilized in one ml of hexafluoroisoproponal (Thomas Scientific, Swedesboro, NJ). There was no peptide solubility issue observed during reconstitution. 15 μl of the peptide was aliquoted per polypropylene tube, and stored at −80°C until further use.
Two monoclonal antibodies were used to develop the sandwich ELISA: 1) mouse monoclonal antibody (mousemAb), clone 6E10 specific to an epitope present on 3–11 amino acid residues of Aβ peptide (capture antibody), and RabmAb specific to Aβ42, clone 1-11-4 to an epitope present on 33–42 amino acid residue (detecting antibody) β. Both antibodies were generated in our Institute, and well characterized as described previously. They are commercially available from BioLegend, San Diego, CA., and have been widely used by AD researchers. The specificity of the antisera was examined using inhibition ELISA assay, immunoblotting, and immunohistochemical methods [34 (link)]. The RabmAb to Aβ42 possesses high affinity to Aβ42 with dissociation constant (KD) for the antibody of 0.7 nM [34 (link)].
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6

Amyloid-Beta Oligomerization with APOE Isoforms

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42 peptide (American Peptide Company), HiLyte Fluor 488-Aβ42, or HiLyte Fluor 555-Aβ42 (AnaSpec) were used for all Aβ oligomerizations and injections27 (link). Under a fume hood, 0.1 mg Aβ peptide was dissolved in ice cold 1,1,1,3,3,3-Hexafluoro-2-Propanol (HFIP, Fluka) then vortex for a few seconds. The solution was dried with a gentle stream of nitrogen to obtain a peptide film at the bottom of the vial. Prior to use, the film was resuspended in anhydrous dimethyl sulfoxide (DMSO) to form a 5 mM solution, sonicated in a water bath for 10 min and diluted in sterile phosphate-buffered saline (PBS) to a final concentration of 100 μM. HiLyte Fluor 488- or 555-Aβ or Aβ42 peptide and E3 or E4 native particles were combined, vortexed, held under oligomer forming conditions (room temperature) for 24 h at a final concentration of 50 μM Aβ and 5 μM APOE and stored at −20 oC until use (abbreviated AβE3 or AβE4). The same molar concentration (10:1) of scrambled Aβ (AnaSpec) was dissolved in vehicle, combined with isolated E3 or E4 particles, held under oligomer forming conditions and stored at −20 oC until use (abbreviated scrAβE3 or scrAβE4). scrAβE3 or scrAβE4 was utilized as negative controls throughout the subsequent experiments. Furthermore, Aβ42 peptide and scrambled Aβ was incubated with PBS vehicle as negative control for APOE particles.
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7

Aβ42 peptide treatment of bEnd.3 cells and pericytes

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Aβ42 peptide was purchased from American Peptide Company (Sunnyvale, CA, USA) and was prepared as previously described (Byun et al., 2015). It was dissolved in hexafluoroisopropanol for 72 h at room temperature (RT) and lyophilized. The peptide was then dissolved again in dimethylsulfoxide. Anti‐ZO‐1, anti‐Claudin 5 (Thermo Fisher Scientific, Waltham, MA, USA), anti‐GAPDH (Abcam, Cambridge, MA, USA), anti‐GFP (Santa Cruz Biotechnology, Inc., Santa Cruz, CA, USA), anti‐CD31 (R&D Systems, Minneapolis, MN, USA), antiphospho CREB (Cell signaling Technology, Danvers, MA, USA), anti‐CREB (Cell signaling Technology), and anti‐Annexin A1 (Invitrogen, Carsbad, CA, USA) were used for Western blot analysis, and Anti‐ZO‐1 (Thermo Fisher Scientific) was used for immunofluorescence images. Y27632, MK801, and l‐glutamate were purchased from Sigma‐Aldrich Co. (St. Louis, MO, USA), Rhosin was purchased from Merck Millipore (Billerica, MA, USA), and human Annexin A1 (ANXA1) recombinant protein was purchased from MyBioSource (San Diego, CA, USA). For experiments, bEnd.3 cells and/or pericytes were treated with Aβ42 (2 μm and/or 5 μm; from 0 to 24 h, differently for each experiment), ANXA1 (1 μg mL−1 and/or 2 μg mL−1; for 24.5 h), Y27632 (30 μm; for 24 h), Rhosin (10 μm; for 24 h), l‐glutamate (30 μm; for 30 min or 24 h), and MK801 (10 μm; for 30 min or 24 h).
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8

Preparation of Amyloid-β Oligomers

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Under a fume hood, 1 mg of Aβ42 peptide (American Peptide Company) was dissolved in ice cold 1,1,1,3,3,3-Hexafluoro-2-Propanol (HFIP, Fluka) to obtain a 1 mM solution then vortex for few seconds. The solution was quickly aliquoted into 3 polypropylene vials and dried with a gentle stream of N2 to obtain a clear peptide film in the bottom of the vials. Prior to use, one film was re-suspended in anhydrous DMSO to form a 5 mM solution, sonicated in water bath for 10 min and diluted 200X with sterile phosphate-buffered saline (PBS). Aβ samples were left at room temperature for 24 h to form oligomer complexes and stored at –20°C until use. The same concentration of scrambled Aβ (AnaSpec) was dissolved in vehicle and utilized as a negative control.
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