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23 protocols using dc alufolien kieselgel 60 f254

1

NMR and Mass Spectrometry Characterization

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NMR spectra were recorded on Varian Mercury
Plus 300 (299.97 MHz for 1H, 75.44 MHz for 13C, and 282.23 MHz for 19F) or Agilent 400-MR DDR2 (399.94
MHz for 1H, 100.58 MHz for 13C, and 376.29 MHz
for 19F) at 298 K unless otherwise indicated. Chemical
shifts δ are given in parts per million, using residual solvent
as an internal standard. 19F NMR and 31P NMR
chemical shifts were measured relative to CCl3F and H3PO4, respectively. Coupling constants J are reported in hertz. High-resolution mass spectra were obtained
on Q-Tof Micro (Waters), equipped with a quadrupole, TOF analyzers,
and an MCP detector or LTQ Orbitrap Velos (Thermo Fisher Scientific).
Gas chromatography–mass spectrometry (GC–MS) spectra
were obtained on GC–MS DSQ II (Thermo). Thin layer chromatography
analyses were carried out on DC Alufolien Kieselgel 60 F254 (Merck).
Preparative column chromatography separations were performed on silica
gel Kieselgel 60 of 0.040–0.063 mm (Merck). Melting points
were measured on a Boetius melting point apparatus and are uncorrected.
Starting materials, reagents, and substrates were obtained from commercial
suppliers and used without further purification. The solvents were
purified and dried using standard procedures. For synthesis of reagents,
see the Supporting Information.
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2

TLC-based Biotransformation Product Separation

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Initial tests were carried out using TLC plates (SiO2, DC Alufolien Kieselgel 60 F254 (0.2 mm thick), Merck, Darmstadt, Germany). The mobile phase contained a mixture of chloroform and methanol in a 9:1 (v/v) ratio. The plates were observed using a UV lamp (254 and 365 nm).
The scale-up biotransformation products were separated using 500 µm preparative TLC silica gel plates (Anatech, Gehrden, Germany). The mobile phase contained a mixture of chloroform and methanol in a 9:1 (v/v) ratio. Separation products were scraped out and extracted twice using ethyl acetate.
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3

Solvent Purification for Organic Synthesis

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Solvents (dioxane, ethyl alcohol, methanol, chloroform), used with further purification, were purchased from VETEC, and reagents were purchased from Sigma-Aldrich. Reactions were monitored by TLC using DCAlufolien Kieselgel 60 F254 (Merck, Kenilworth, NJ, USA).
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4

Analytical Methods for Synthetic Transformations

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Progress of reactions and purity of products obtained during syntheses and biotransformation were performed on silica gel-coated aluminium plates (DC-Alufolien Kieselgel 60 F254, Merck, Darmstadt, Germany) with a mixture of hexane and acetone. GC analysis of all compounds was carried out on an Agilent Technologies 6890N instrument (Varian, Agilent Technologies, Santa Clara, CA, USA) using a DB-17 column (cross-linked methyl silicone gum, 30 m × 0.32 mm × 0.25 μm). The enantiomeric excess of the product obtained during biotransformation was determined by GC analysis using the chiral column CP-cyclodextrin-B-225 (30 m × 0.25 mm × 0.25 μm) under the following conditions: injector 200 °C, detector (FID) 250 °C, column temperature: 140 °C (hold 1 min), 140–160 °C (rate 0.5 °C/min), and 160–200 °C (rate 10 °C/min) and 200 °C (hold 1 min).
1H NMR spectra were recorded in a CDCl3 solution on a Bruker Avance DRX 300 MHz spectrometer (Bruker, Billerica, MA, USA) or on a Bruker Avance 600 MHz spectrometer (Bruker, Billerica, MA, USA). The molar mass of the new product was confirmed by high resolution mass spectrometry analysis using a Waters LCT Premier XE instrument (ESI ionisation) (Waters Division, Milford, MA, USA). Optical rotation was determined on a P-2000 polarimeter (Jasco Easton, PA, USA) in chloroform solutions.
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5

Preparative TLC for Biotransformation

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Initial tests were carried out using TLC plates (SiO2, DC Alufolien Kieselgel 60 F254 (0.2 mm thick), Merck, Darmstadt, Germany). The mobile phase contained a mixture of chloroform and methanol in 9:1 (v/v) relation. The plates were observed using a UV lamp (254 and 365 nm).
The scale-up biotransformation products were separated using 1000 µm preparative TLC silica gel plates (Anatech, Gehrden, Germany). The mobile phase contained a mixture of chloroform and methanol in a 9:1 (v/v) ratio. Separation products were scraped out and extracted twice using ethyl acetate.
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6

Preparative TLC Purification and NMR Characterization

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The course of biotransformations was monitored using TLC plates (SiO2, DC Alufolien Kiesel gel 60 F254 (0.2 mm thick), Merck, Darmstadt, Germany). Products were separated using preparative TLC plates (Silica Gel GF, 20 × 20 cm, 500 μm, Analtech) and a cyclohexane: ethyl acetate mixture (9:1, v/v) as an eluent, according to a method described previously [29 (link),42 (link)]. The product was observed (without additional visualisation) under the UV lamp at a wavelength of 254 nm.
NMR analysis was performed using a DRX 600 MHz Bruker spectrometer (Bruker, Billerica, MA, USA). The prepared samples were dissolved in deuterated chloroform CDCl3. The performed analyses include 1H NMR, 13C NMR, HMBC (two-dimensional analysis), HMQC (heteronuclear correlation) and COSY (correlation spectroscopy) (Supplementary Materials).
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7

Biomass Extraction and Characterization of Strain SCA2-4

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The biomass of strain SCA2-4T was collected by centrifugation at 8000 rpm for 20 min after growing in a shaken flask of the TSB broth (15.0 g of tryptone, 5.0 g of soytone, 30.0 g of sodium chloride, 1 L of sterile water, pH 7.1–7.5) at 25°C for 5 d. Respiration quinone was extracted from the lyophilized mycelia (0.5 g) by a reverse-phase partition high-performance liquid chromatography (HPLC) (Sasser, 1990 ). The cellular fatty acids were analyzed according to the standard Microbial Identification System (Sherlock Version 6.1, MIDI database) by a gas chromatography (56890N, Agilent Technologies) (Komagata and Suzuki, 1987 ). The polar lipids were extracted from dry mycelia and individually separated by a two-dimensional thin-layer chromatography (TLC) on silica gel plates (Art 5554, DC-Alufolien Kieselgel 60F 254, Merck, Germany) (Minnikin et al., 1979 (link)).
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8

Synthesis of Thiourea Derivatives

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Commercially available thiourea 1 and acyl chlorides a-l were purchased by Alfa-Aesar and Sigma-Aldrich. DMF, DMA and pyridine were reagent grade and were dried on molecular sieves (5 Å 1/16" inch pellets). Unless otherwise stated, all commercial reagents were used without further purification. Organic solutions were dried over anhydrous sodium sulphate. Thin-layer chromatography (TLC) system for routine monitoring the course of parallel reactions and confirming the purity of analytical samples employed aluminium-backed silica gel plates (Merck DC-Alufolien Kieselgel 60 F254). DCM or DCM/methanol (9:1) were used as a developing solvent and detection of spots was made by UV light and/or by iodine vapours. Melting points were determined on a Fisher-Johns apparatus and are uncorrected. 1H NMR and 13C NMR spectra were recorded on a Varian Gemini, Bruker DPX-300 or JEOL JNM-ECZR instrument; chemical shifts were reported in d (ppm) units relative to the internal reference tetramethylsilane and the splitting patterns were described as follows: s (singlet), bs (broad singlet), d (doublet), t (triplet), q (quartet) and m (multiplet). The first-order values reported for coupling constants J were given in Hz. Elemental analyses were performed by an EA1110 Analyzer, Fison Instruments (Milan).
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9

Thin-Layer Chromatography of Organic Compounds

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Thin-layer chromatography (TLC) was carried out employing aluminum-backed silica gel plates (Merck DC-Alufolien Kieselgel 60 F254, Merck, Washington, DC, USA), and detecting spots by UV light (254 nm or 365 nm), using a handheld UV lamp, LW/SW, 6W, UVGL-58 (Science Company®, Lakewood, CO, USA). The chromatographs were eluted in a closed glass developing chamber to keep the environment saturated with solvent vapors, using a mixture of EtOAc/MeOH/AcOH 9/1/0.2 v/v/v (mixture A) or 100% MeOH (mixture B).
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10

Chiral Biotransformation Product Analysis

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Progress of all biotransformations and purity of isolated products were checked by TLC on silica gel-coated aluminium plates (DC-Alufolien Kieselgel 60 F254, Merck, Darmstadt, Germany) and also by GC analysis performed on a CP03380 instrument (Varian, Agilent Technologies, Santa Clara, CA, USA) using an DB-1 column (dimethylpolysiloxane, Agilent, 30 m × 0.25 mm × 0.25 µm). Temperatures during GC analysis were as follows: injector 250 °C, detector (FID) 300 °C, column temperature: 75 °C (hold 3 min), 75–80 °C (rate 2 °C/min), 80–150 °C (rate 17 °C/min), 150–300 (rate 40 °C/min), 300 °C (hold 1 min). The enantiomeric excess of the products obtained during biotransformation were determined by GC analysis using chiral column Gamma DEXTM 325 (30 m × 0.25 mm × 0.25 µm, Supelco, Bellefonte, PA, USA) under the following conditions: injector 150 °C, detector (FID) 250 °C, column temperature: 80 °C (hold 20 min), 80–107 °C (rate 1 °C/min), 107–200 °C (rate 30 °C/min), 200 °C (hold 1 min). All products were purified using preparative column chromatography on silica gel (Kieselgel 60, 230–400 mesh). NMR spectra were recorded with a Bruker Avance DRX-500 spectrometer in CD3OD solution. Optical rotations were measured on P-2000 polarimeter (Jasco, Easton, PA, USA).
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