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Agilent 6120 quadrupole mass spectrometer

Manufactured by Agilent Technologies
Sourced in United States

The Agilent 6120 quadrupole mass spectrometer is a laboratory instrument used for the detection and identification of chemical compounds. It utilizes a quadrupole mass analyzer to separate and analyze ionized molecules based on their mass-to-charge ratio. The 6120 provides accurate mass measurements and qualitative analysis capabilities for a variety of applications.

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5 protocols using agilent 6120 quadrupole mass spectrometer

1

Peptide Synthesis and Cell Culture Workflow

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All resins and amino acids were purchased from Novabiochem. HCTU and Fmoc-11-amino-3,6,9-trioxaundecanoic acid were purchased from ChemPep. All solvents and chemical reagents were purchased from Sigma, Fisher, or Acros and used without further purification. Cell culture media and PBS was obtained from Lonza, trypsin EDTA from Corning, fetal bovine serum and horse serum from Fisher, and penicillin/streptomycin from Amresco.
All high-performance liquid chromatography and LC-MS were performed on an Agilent 1200 series HPLC coupled to an Agilent 6120 quadrupole mass spectrometer. Absorbance measurements were acquired using a Biotek Synergy 2 microplate reader.
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2

Synthesis and Characterization of Organic Compound

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1H NMR (400 MHz, DMSO-d6) δ 7.92 (t, J = 5.6 Hz, 1 H), 7.56 (dt, J = 42.2, 6.0 Hz, 1 H), 7.38–7.03 (m, 5 H), 5.36 (dd, J = 14.9, 5.6 Hz, 1 H), 4.45 (td, J = 5.6, 2.2 Hz, 1 H), 3.72 (dd, J = 5.6, 2.6 Hz, 1 H), 3.45–2.94 (m, 4 H), 2.70 (ddt, J = 10.4, 5.8, 1.8 Hz, 2 H), 2.51 (p, J = 1.9 Hz, 1 H), 0.96 (d, J = 6.9 Hz, 3 H), 0.90–0.63 (m, 6 H); HPLC using an Agilent 1100 equipped with an Eclipse + C18 4.1 × 55 mm 1.8-micron column and a flow rate of 0.5 mL/min eluting with a 5 to 100% gradient of acetonitrile in water modified with 0.1% formic acid over 9 minutes provided a tR = 5.93 min and 100% purity as detected at 220 and 254 nM. Mass was determined using an Agilent 6120 quadrupole mass spectrometer M + 1+ = 337.2.
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3

Quantification of Crizotinib in Ba/F3 Cells

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Ba/F3 cells expressing NPM-ALK (9×104 cells/200 μL) were cultured with crizotinib (0.5 μM) in combination with α-tocopherol (25 μM) for 60 or 120 min and washed with ice-cold PBS, and then lysed with 125 μL of 50% acetonitrile. Samples were centrifuged at 5,000 r.p.m at 4°C for 2 min and the supernatant was analyzed by an Agilent 6120 quadrupole mass spectrometer equipped with an electrospray interface attached to an Agilent 1200 series (Agilent Technologies, Santa Clara, CA, USA). Chromatographic separations were performed on Agilent ZORBAX Eclipse Plus C18 column (4.6 × 100 mm, 3.5 μm) at a flow rate 0.5 mL/min. The mobile phases used were water with 0.1% formic acid (A) and acetonitrile with 0.1% formic acid (B). At time zero the flow consisted of 90% of mobile phase A and 10% mobile phase B. One minute after injection, the proportion of B was linearly increased to 100% over 4 min followed by keeping constant at 100%B for 5 min. From this point, the mobile phase was set to initial conditions (90%A and 10%B) and the column was equilibrated for 5 min prior to the next injection. The electrospray ionization probe was set at 350°C, with the nebulizing gas pressure and electrospray gas flow set at 20 psi. and 13 L/min, respectively. Detection of crizotinib was carried out by selected ion monitoring of [M+H]+ ions at m/z 450 in the positive ion mode.
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4

UHPLC-DAD-MS for Compound Identification

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The ultra-high performance liquid chromatography-diode array detector-mass spectrometry (UHPLC-DAD-MS) data were obtained from an Agilent 1290 Infinity series UHPLC system with a diode array detector and an Agilent 6120 quadrupole mass spectrometer (Agilent Technologies, Santa Clara, CA). The mass spectrometer contained a dual atmospheric pressure chemical ionization (APCI) and electrospray ionization (ESI) interface. The liquid chromatography (LC) column was an Agilent ZORBAX Eclipse Plus C18 (2.1 × 100 mm, 1.8 μm). The column temperature was 30 °C. The flow rate was 0.25 mL/min. The mobile phase eluent consisted of isopropanol with 5 mM ammonium formate (B) and water (A), both containing 0.05% formic acid. The gradient was 10% B programmed to 80% in 20 min, and then programmed to 100% in 22 min. Ionization and detection of compounds were carried out on the mass spectrometer using the ESI positive mode over the mass range of m/z 100–800. The fragmentor and capillary voltages were 100 V and 4000 V, respectively. The drying gas flow rate was 12.0 L/min, the nebulizer pressure was 30 psi and the drying gas temperature was 300 °C. The DAD was employed to monitor at 254, 280 and 325 nm.
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5

Assessing FGF21 Susceptibility to FAP

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In order to check whether mouse FGF21 is susceptible to FAP cleavage, 25 μM mouse FGF21 protein was incubated with or without 125 nM recombinant human FAP (R&D systems) at 37 °C. The protein samples were analyzed by LC–MS (Agilent 1260 Infinity coupled with Agilent 6120 Quadrupole mass spectrometer). 10 μg of protein was analyzed by RP C8 column (kinetex, 2.6 μm, 75 × 4.6 mm) with a linear gradient from 10% aqueous acetonitrile (0.05% TFA) to 80% aqueous acetonitrile (0.05% TFA) over 10 min at a flow rate of 1.0 ml/min.
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