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Rip assay kit

Manufactured by Merck Group
Sourced in United States

The RIP assay kit is a laboratory tool used to detect and quantify protein-RNA interactions. It provides a standardized method for immunoprecipitating RNA-binding proteins and analyzing the associated RNA molecules. This kit enables researchers to study the interactions between cellular proteins and RNA, which is crucial for understanding gene expression regulation and RNA metabolism.

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24 protocols using rip assay kit

1

RIP Assay to Validate circ_0097271-miR-640 Interaction

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Using a commercial RIP assay kit from Merck Millipore (17-704, USA), RIP assay was implemented to ensure the involvement of circ_0097271 with miR-640. In brief, Saos-2 and SW1353 cells were lysed, and cell lysates were incubated with magnetic beads coated with Ago2 antibody (Anti-Ago2) or IgG antibody (Anti-IgG). RNA complexes could be captured by antibody-coated beads and then eluted for qPCR analysis.
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2

Quantification of PCED1B-AS1 in PDAC

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PDAC cells transfected with miR-411-3p mimics or NC mimics were collected, and according to the manufacturer's protocols, RIP was performed using an anti-Ago2 antibody (EMD Millipore) and an RIP assay kit (EMD Millipore). Mouse anti-human immunoglobulin G (IgG) antibody was used as the control. Subsequently, RNA was extracted using TRIzol, and the expression of PCED1B-AS1 was assessed using RT-qPCR.
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3

Validating lncRNA-miRNA Interaction

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The correlation between AC005332.7 and miR-331-3p was validated using an RNA-binding protein immunoprecipitation (RIP) assay kit (Sigma). Shortly, the anti-Ago2 antibody was used to immunoprecipitate the chromatin, and immunoglobulin G (IgG) served as a control. AC005332.7 and miR-331-3p enrichment were measured using quantitative reverse transcription polymerase chain reaction (qRT-PCR).
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4

Ago2-Mediated FDNCR and miR-543-3p Interaction

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A RIP assay was performed using a RIP assay kit (Sigma-Aldrich, St. Louis, MO, USA) according to the manufacturer’s instructions. Briefly, GCs were collected and lysed using RIP lysis buffer. Then, the cell lysates were incubated with magnetic beads conjugated with anti-Ago2 antibody (Abcam, Cambridge, UK). Thereafter, the RNA-protein complex was extracted, and the abundance of FDNCR and miR-543-3p in bound fractions was evaluated using qRT-PCR analysis.
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5

Quantifying RNA-Protein Interactions

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RNA immunoprecipitation assays were performed using an RIP assay kit (Millipore Corp., Billerica, MA, USA). According to the manufacturer's protocol, the protein-RNA complex was isolated, and anti-AGO2 or IgG was added to the reaction system for immunoprecipitation. After RNA purification, the immunoprecipitated RNA was subjected to QPCR and/or PCR. IgG served as a negative control.
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6

Investigating lncARSR-miR-34a-5p Interaction

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Cell overexpression or knockdown of lncARSR were used to perform RIP assay with AGO2 antibody in accordance with the instructions of Magna RIP™ Kit (Millipore). Enrichment levels of lncARSR and HK1 were measured with qPCR assay.
MS2bp‐green fluorescent protein (GFP) and MS2, MS2‐lncARSR, or MS2‐lncARSR mut were co‐transfected into CRC cells. RIP assay was performed with the RIP Assay Kit (Millipore) in accordance with the instructions. The cell lysates were incubated with anti‐GFP and IgG. Enrichment levels of miR‐34a‐5p were measured with qPCR assay.
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7

Analyzing RNA-binding Proteins by RIP

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RNA immunoprecipitation assays were examined using a RIP assay kit (Millipore Corp, Billerica, MA, USA). According to the manufacturer's protocol, the protein‐RNA complex was isolated, and anti‐AGO2 or IgG was added to the reaction system for immunoprecipitation. After RNA purification, the immunoprecipitated RNA was subjected to QPCR and/or PCR. IgG served as a negative control.
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8

Interaction of miR-140-5p, PGM5-AS1, and FBN1

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The interaction among miR‐140‐5p, PGM5‐AS1, and FBN1 was identified with a RNA immunoprecipitation (RIP) assay kit (Millipore Inc., Bedford, MA, USA). Following treatment with lysis buffer (P0013B; Beyotime Biotechnology Co., Shanghai, China), the cells were subjected to 10‐min centrifugation at 35 068 g and 4 °C to harvest the supernatant. A large portion of cell extract was taken as the input, and the remainder was cultured with the antibody for coprecipitation as follows: After being resuspended in 100 μL RIP Wash Buffer, 50 μL magnetic beads were cultured with 5 μg antibody. The complex of bead and antibody was then resuspended using 900 μL RIP Wash Buffer, followed by overnight culture in 100 μL cell extraction at 4 °C. The beads–protein complex was obtained by placing the samples on the magnetic base. The antibodies used for the RIP assay were argonaute 2 (Ago2, ab32381, 1 : 50; Abcam Inc.), with IgG (1 : 100, ab109489; Abcam Inc.) used as the NC.
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9

Argonaute-2 Interaction Assay in CRC Cells

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RIP Assay Kit (Millipore) was used to perform this assay. In brief, magnetic beads were incubated with antibodies against argonaute2 (Anti-Ago2) or immunoglobulin G (Anti-IgG) at 4°C overnight. HCT116/CRR and Caco2/CRR cells were lysed using RIP buffer. Then, the cell lysates were added into the magnetic bead-antibody complex at 4°C overnight. After that, the proteinase K buffer was used to purify RNA. The enrichment of circ_0007031 and miR-760 was determined using qRT-PCR.
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10

RIP Assay for FOXO1 Interaction

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According to the manufacturer’s instructions, RIP assay kit (Millipore, USA) was used for RIP assay. Briefly, HEK-293 cell suspension was prepared in RIP buffer. Anti-FOXO1 antibody (Cell Signaling Technology, 5 μg) was incubated with the cell suspension at 4 °C overnight. Then, the precipitated RNA was purified and analyzed by qRT-PCR. Isotype-matched IgG (5 μg) was used as a negative control.
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