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10 protocols using gst fusion protein purification kit

1

Fluorescent Labeling of SARS-CoV-2 RBD

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To detect antigen-specific cells, AP205-AF647 was generated by conjugating AF647 to the purified AP205 VLPs using the AF647 labeling kit from Thermo Fisher Scientific as described before.33 (link) Qb-AF64733 (link) was used to indicate potential AF647+ cells.
The DNA sequence encoding the BirA (Gene ID: 948469) was synthesized and cloned into the pGEX vector (Addgene). E. coli BL21 (DE3) transformed with pGEX-BirA was grown in LB medium and protein expression was induced with 0.1 mM IPTG at 18°C for 18 h. GST-BirA protein was purified by affinity chromatography using GST Fusion Protein Purification Kit (GenScript,Cat.NO L00206) according to the manufacturer’s instructions. The biotinylated RBD was generated by mixing 100 μM RBD-AviTag, 1 μM GST-BirA, 10mM magnesium chloride, 10mM ATP, and 150 μM D-Biotin (BBI Life Sciences, China). The mixture was incubated at 30°C for 1 h as described before.79 (link) Biotinylated RBD was then mixed with fluorochrome-conjugated streptavidin at room temperature for 60 min to generate fluorescently labeled RBD tetramer.
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2

Purification of Recombinant Murine Grp78

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Recombinant murine Grp78 was prepared as our previous report (17 (link)). Briefly, plasmid encoding full length of murine Grp78 was transformed into Escherichia coli BL21 to generate Grp78. Protein was purified using GST Fusion Protein Purification Kit (GenScript, USA) and identified by SDS-PAGE and immunoblotting. Endotoxins were removed by the Toxin Eraser™ Endotoxin Removal Kit (GenScript), and the endotoxin contamination was less than 1 EU/mg protein. The Grp78 concentration was detected by the BCA Protein Assay Kit (Beyotime, Beijing, China). Control extracts from empty vector-transformed E. coli BL21 were prepared in the same way.
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3

Purification and EMSA of GhWRKY91

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The GhWRKY91 gene was cloned into pGEX-4T-1 to produce pGEX-4T-1-GhWRKY91 constructs, which were fused to a glutathione S-transferase (GST) tag at the N-terminus. The pGEX-4T-1-GhWRKY91 constructs were transformed into the E. coli strain Arctic-Express™, after which, the cells containing the fusion plasmids were induced by 0.5 mM isopropyl-β-D-thiogalactoside (IPTG) at 20°C for 4 h at 220 r/min. The fusion proteins were purified with a GST Fusion Protein Purification Kit (GenScript) and digested to remove any GST tags. Any biotin end-labelled probes containing a W-box originated from the promoter regions of GhWRKY17, GhWRKY27a, GhWRKY68, and GhAPX1. Unlabelled probes were used as cold competitors. We performed the EMSAs using a LightShift® Chemiluminescent EMSA Kit (Thermo Scientific, Waltham, MA, USA).
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4

Validating HN-GRP78 Interaction via GST Pulldown

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To validate the interaction between HN and GRP78, GST and GST-HN recombinant proteins were expressed in Escherichia coli BL-21 cells and purified using the GST Fusion Protein Purification Kit (Genscript, #L00207) as per the manufacturer’s protocol. The Glutathione Sepharose 4B beads (Cytiva, #17075601) were incubated with the purified GST-tagged proteins at 4°C for 8 h, followed by washing with lysis buffer for four times, and further incubated overnight at 4°C with GRP78 protein cell lysates. The interaction complexes were eluted from the beads. The presence of GST, GST-HN and GRP78 was confirmed by Western blotting using mouse anti-GST mAbs and rabbit anti-GRP78 pAbs, respectively.
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5

Validating HN-GRP78 Interaction via GST Pulldown

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To validate the interaction between HN and GRP78, GST and GST-HN recombinant proteins were expressed in Escherichia coli BL-21 cells and purified using the GST Fusion Protein Purification Kit (Genscript, #L00207) as per the manufacturer’s protocol. The Glutathione Sepharose 4B beads (Cytiva, #17075601) were incubated with the purified GST-tagged proteins at 4°C for 8 h, followed by washing with lysis buffer for four times, and further incubated overnight at 4°C with GRP78 protein cell lysates. The interaction complexes were eluted from the beads. The presence of GST, GST-HN and GRP78 was confirmed by Western blotting using mouse anti-GST mAbs and rabbit anti-GRP78 pAbs, respectively.
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6

Recombinant Protein Degradation Assay

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The ORFs of FonAP-2α, FonAP-2β, and FonAP-2μ, and their palmitoylation-deficient variants were cloned into pGEX4T-3 or pET28a. Prokaryotic expression of recombinant proteins in Escherichia coli strain BL-21 was induced by adding IPTG (isopropyl-β-D-thiogalactopyranoside; Sigma-Aldrich, St. Louis, MO, USA) to a final concentration 0.1 mmol/L, and recombinant proteins were purified using a glutathione S-transferase (GST) fusion protein purification kit (Genscript, Nanjing, China) or Profinity IMAC Ni-charged resin (Bio-Rad, Hercules, CA, USA) according to the manufacturer’s instructions. Cell-free protein degradation assays were carried out following a previously described protocol with modifications (76 (link)). Briefly, total proteins were extracted in degradation buffer (5 mmol/L DTT, 10 mmol/L ATP, 4 mmol/L PMSF, 10 mmol/L MgCl2, 25 mmol/L Tris-HCl, and 10 mmol/L NaCl) from the WT and ΔFonpat2 strains and then incubated with GST-FonAP-2α, HIS-FonAP-2β, GST-FonAP-2μ, GST-FonAP-2αC400S, HIS-FonAP-2βC5,260S, or GST-FonAP-2μC24S at 22°C. Protein samples were collected, boiled, separated on 12.5% SDS-PAGE gels, and detected by Western blotting using anti-GST and anti-HIS antibodies (1:1,000 dilution; Genescript). GAPDH was detected with anti-GAPDH antibody and used as a control.
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7

Recombinant Protein Expression and Purification

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The coding sequences of FonPARP1, FonKin4, and FonKin4-ST were cloned into the pGEX4T-3 vector, featuring a GST tag, or pET32a vector, possessing an HIS tag. Prokaryotic expression and purification of recombinant proteins were performed as previously described (Liu et al., 2019 (link)). Briefly, E. coli Rosetta cells carrying the recombinant vectors were induced by 1 mM Isopropyl ß-D-1-thiogalactopyranoside (IPTG; Sigma-Aldrich) at 18°C for 20 h. Subsequently, the recombinant proteins were purified using a GST fusion protein purification kit (Genscript, Piscataway, NJ, United States) and Profinity IMAC Ni-charged resin (Bio-Rad, Hercules, CA, United States), respectively.
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8

Marine DNA Extraction and Purification

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TIANamp Marine Animals DNA Kit was obtained from Tiangen Biotech (Beijing, China). RNAiso Plus, First-Strand cDNA Synthesis Kit, and SYBR Premix Ex Taq Polymerase were purchased from TaKaRa Biotech (Dalian, China). GST Fusion Protein Purification Kit and His-tagged Protein Purification Kit were purchased from GenScript (Nanjing, China).
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9

Expression and Purification of SseB Proteins

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The recombinant expression plasmids pCold-SseB and pGEX-6p-1-SseB were transformed into competent E. coli BL21 (DE3) cells. For the expression of rHis-SseB with a His tag at the end of its N-terminuses, E. coli BL21 (DE3) harboring pCold-SseB was induced by 0.5 mM isopropyl-β-d-1-thiogalactopyranoside (IPTG) at 15 °C for 24 h. For the expression of rGST-SseB with a GST tag at the end of its N-terminuses, E. coli BL21 (DE3) harboring pGEX-6p-1-SseB was induced by 0.5 mM IPTG at 30 °C for 5 h. The bacteria were harvested and resuspended in ice-cold PBS. The bacterial cells were lysed using ultrasonic tissue homogenizers. The bacterial lysates were evaluated using SDS-PAGE. The soluble recombinant proteins, rHis-SseB and rGST-SseB, were purified using the His•Bind® Purification Kit (Novagen, San Diego, CA, USA) and GST Fusion Protein Purification Kit (GenScript, Nanjing, China).
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10

RNA Extraction and cDNA Synthesis Protocol

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RNAiso Plus, First-Strand cDNA Synthesis Kit, and SYBR Premix Ex Taq Polymerase were purchased from TaKaRa Biotech (Dalian, China). TIANamp Marine Animals DNA Kit was obtained from Tiangen Biotech (Beijing, China). GST Fusion Protein Purification Kit and His-tagged Protein Purification Kit were purchased from GenScript (Nanjing, China).
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