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13 protocols using zobell marine broth

1

Antibacterial Compound Production in Media

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To study the effect of culture media on the production of antibacterial compounds 50 μl from overnight grown culture of MSI45 was inoculated into 100 ml of different media such as nutrient broth supplemented with 2% NaCl, Luria Bertani broth, modified marine broth, starch casein broth, and Zobell marine broth (Himedia). Each culture medium was then incubated at 28 °C for 72 h. After incubation cell free supernatant was obtained by centrifugation at 10 621 × g for 15 min. Then antibacterial activity of the CFS separated from different media was determined using a agar well diffusion assay as mentioned above.
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2

Anthracene Biodegradation in Marine Broth

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To the pre-sterilized medium (Zobell Marine Broth, (HiMedia)), anthracene at 100–1000 ppm concentrations were supplemented aseptically and inoculated with the 1 × 105 cells/mL of MTCC 5514, incubated at 37 °C under shaking condition (200 rpm) for the period of 10, 16 and 22 days.
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3

Bacillus megaterium Lipopeptide29 Production

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A marine bacterium Bacillus megaterium was used for production of Lipopeptide29 . This bacterial strain was obtained from sea water of the Andaman and Nicobar Islands, India. For preparation of the primary inoculums, bacterial strain was maintained in Zobell marine agar (Himedia, Mumbai, India) and grown in Zobell marine broth following incubation for 12 h at 32 °C. Primary inoculums were inoculated in 250 ml Erlenmeyer flask containing glucose mineral salts medium (GMSM containing: glucose−25 g/L, NH4NO3–6 g/L, KH2PO4–0.028 g/L, K2HPO4–1.6 g/L, MgSO4•7H2O–0.3 g/L and CaCl2•2H2O–0.2 g/L) and the flask was kept in a shaking incubator at 180 rpm and 32 °C till mid-exponential growth of cells. The inoculum was further inoculated in 1 L Erlenmeyer flasks containing 200 ml GMSM and kept in incubator at 180 rpm and 32 °C. Fermentation broth samples were collected at different time for lipopeptide collection.
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4

Media for Microbial Growth Analysis

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The media components like Zobell Marine Broth, glucose, maltose, sucrose, lactose were obtained from Hi-Media, Mumbai India. Ethanol and silver nitrate were obtained from Merck India.
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5

Screening Biosurfactant-Producing Bacteria

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Biosurfactant producers were screened based on the surfactant activity exhibited by the culture media after 24–72 hours of incubation at 37°C in the presence of the bacterial isolates. In brief, Zobell marine broth (Hi Media) (100 mL in 1000 mL capacity conical flask) was sterilized and inoculated with the isolated cultures and was incubated at 37°C for 24–72 hours under shaking condition. Followed by incubation, the samples were made cell-free by centrifugation at 10,000 × g at 4°C. Biosurfactants activity of the cell free medium was assessed according to the procedure summarized in the following paragraphs and the isolates exhibiting appreciable surfactant activity were selected and subjected to identification and further production.
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6

Comprehensive Bacterial Characterization Protocol

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The bacterium was grown in Zobell marine broth (HiMedia, India) using sterilized sea water and incubated at 28 °C. The biochemical characterizations were done by using KB002, KB009A, KB009B and KB009C (HiMedia, India) based on standard procedures. The bacterial culture (50 µl) grown at log phase was transferred onto each well in the test kits and incubated at 37 °C for 24 h. The results were checked after appropriate incubation by comparing to biochemical test result chart accordingly to manufacturer instruction. Molecular characterization included extraction of genomic DNA followed by amplification using 16S rRNA primer (27F AGAGTTTGATCCTGGCTCAG and 1492R GGTTACCTTGTTACGACTT) and sequenced. The obtained sequences were aligned in MEGA6 and phylogenetic tree was constructed using neighbour-joining method. The genomic DNA G + C% was measured using thermal denaturation method.
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7

Bacterial PHA Production Quantification

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The selected bacterial strains were grown first in Zobell marine broth (Himedia) and incubated at 30 °C for 24 h. OD was taken at 600 nm. 2 mL of culture was inoculated in 100 mL of marine basal medium media (MBM) with 2% of glucose as carbon source. The culture was collected in centrifuge tube at 48 and 72 h, respectively, and 5 ml was centrifuged at 8000 rpm for 10 min with subsequent sterile distilled water to remove traces of broth. The cell pellet was dried and treated with 5 ml of 4% sodium hypochlorite followed by incubation at 37 °C for 20 min. Centrifugation was carried out at 8000 rpm for 10 min. Later pellet was washed with cold diethyl ether [17 (link)]. The pellet is dissolved in hot chloroform and 0.5 mL overnight dried sample is further assayed by Slepecky and Law’s method [18 (link)] for PHB quantification. The standard graph was prepared of PHB obtained from sigma in concentration of 1 mg/mL. The selected bacterial strains for PHA production were grown and quantified in triplicates.
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8

Antimicrobial Potential of Marine Bacteria

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The antibiotic resistance pattern of clinical isolates (13 S. aureus phenotypes) were collected from the clinical laboratories (Puducherry) and were screened against antibiotics (Himedia) such as ampicillin 10 mcg per disc, azithromycin 15 mcg per disc, chloramphenicol 30 mcg per disc, ciprofloxacin 5 mcg per disc, erythromycin 15 mcg per disc, gentamicin 10 mcg per disc, kanamycin 30 mcg per disc, mecillinam 10 mcg per disc, penicillin-G 10 units per disc and vancomycin 30 mcg per disc as per the Clinical & Laboratory Standards Institute: CLSI Guidelines (2013). The phenotypes (6) showed complete antibiotic resistance was selected for the activity screening.
The isolated colonies were cultivated on Zobell marine broth (Himedia) at 28 °C for 96 h at 200 rpm. The cell free supernatant (CFS) was obtained by centrifugation (Eppendorff) at 10 621 × g for 15 min and was used for the screening of antimicrobial activity by agar well diffusion assay.22 (link) Muller Hinton agar (MHA) plates were prepared and overnight grown culture of S. aureus was swabbed on the surface of MHA plates. Then wells were made using a sterile steel cork borer and the wells were filled with 50 μl of cell free supernatant (CFS) and incubated at 37 °C for 24 h. Later the plates were inspected for zone formation.
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9

Biosynthesis of Gold Nanoparticles

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Chloroauric acid (HAuCl4·3H2O), and other pure chemicals and biochemicals, were purchased from Sigma-Aldrich, India. Zobell Marine broth was purchased from Himedia, India. Freshly prepared aqueous solution of HAuCl4 (1 mM), prepared using double-distilled (DD) water, was used in the experimental work. All the glassware used was sterilized and thoroughly washed with pure water. All other chemicals and reagents were of analytical grade.
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10

Vibrio Species Identification Protocol

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Bacterial isolates belonging to three different Vibrio spp. namely, 1. Identification of these isolates was done on the basis of a battery of conventional microbiological tests (Noguerola and Blanch, 2008; Bergey et al., 2012) and 16SrRNA gene sequencing (Weisburg et al., 1991) . Further, confirmation of the identification was done using species specific PCR (Table S1). All the isolates were preserved in Zobell Marine Broth (HiMedia) containing 20% glycerol at -80 • C.
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