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12 protocols using anti cd16 apc cy7

1

NK Cell Functional Assay with Immune Complexes

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Human NK cells were isolated from buffy coats using RosetteSep NK cell enrichment kit (StemCell Technologies) and Ficoll separation. The isolated NK cells were rested overnight at 1.5 × 106 cells/mL in IL-15 at 37°C. ELISA plates were coated with antigen at 300 ng/well and incubated for 2 hours at 37°C. Plates were blocked with 5% BSA in PBS overnight at 4°C. The next day, 100 μL of antibodies, at a concentration of 5 μg/mL, were added to the plates. Plates were incubated for 2 hours at 37°C to form immune complexes. After the incubation, NK cells were added to the plates at 5 × 104 cells/well in R10 supplemented with anti-CD107a PE-Cy5, Brefeldin A (MilliporeSigma, B7651-5MG), and GolgiStop (BD Biosciences, 555802). Plates were incubated for 5 hours at 37°C. Following the incubation, NK cells were stained for the surface markers with anti-CD56 PE-Cy7, anti-CD16 APC-Cy7, and anti-CD3 Pacific Blue (BD Biosciences, 557747, 557758, 558124). NK cells were fixed and permeabilized with Fix&Perm cell permeabilization kit (Invitrogen, Thermo Fisher Scientific). Cells were incubated with anti–MIP-1β PE and anti–IFN-γ FITC (BD Biosciences, 550078, 340449) to stain for intracellular markers. Cells were acquired on an Intellicyt iQue.
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2

Assessment of NK Cell Activation in HIV

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96-well plates were coated with 1.5μg/ml of gp120 or gp70 V1V2 overnight at 4°C and washed with PBS. Diluted plasma samples were added, incubated at 25°C for 2 hours, and washed with PBS. Cryopreserved PBMCs from one healthy human donor were added at 1 million cells/well and incubated at 37°C for 6 hours in presence of Brefeldin A and Monensin (BD Bioscience).
Cells were surface stained with anti-CD3 AF700 (Clone UCHT1, BD Pharmingen), anti-CD56 PE-Cy7 (Clone B159, BD Biosciences), anti-CD16 APC-Cy7 (Clone 3G8 BD Biosciences), anti-CD19 BV510 (Clone HIB19, BD Biosciences), anti-CD14 BV510 (Clone M5E2, Biolegend) and with Live/dead Fixable Aqua Cell Stain (Thermo Fisher Scientific). Cells were fixed and permeabilized (Cell Fixation & Permeabilization Kit, ThermoFisher) and stained intracellularly for TNF (Clone Mab11, Biolegend), IFNγ (Clone B27, BD Biosciences), and MIP-1β (Clone D21-1351, BD Biosciences). Data were acquired on a BD LSRII instrument and analyzed using FlowJo Version 9.9.6 software. NK cells were gated as follows: singlets (FSC-H v. FSC-A); Aqua-negative; low side scatter; triple negative for CD3, CD19, and CD14; and either CD56+CD16-, CD56+CD16+, or CD56-CD16+ (S9 Fig).
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3

Phenotypic Analysis of Cultured Monocytes/Macrophages

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Phenotypic analysis was carried out on cultured monocytes/macrophages by using the following mouse monoclonal antibodies: anti-CD14 (PE-Cy7), anti-CD163 (APC), anti-CD206 (APC-Cy7), anti-CD209 (PerCP-Cy5.5) (Biolegend, San Diego, CA, USA); anti-CD16 (APC-Cy7) (BD Biosciences, San Jose, CA, USA); and anti-MerTK (clone 125518; PE) (R&D Systems). MerTK expression was evaluated using appropriate PE-labeled isotype control (Biolegend). Cells were analyzed using FACSCalibur™ (BD Biosciences) and FlowJo software (Tree Star, Ashland, OR, USA).
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4

SARS-CoV-2 S Protein-Induced NK Cell Responses

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For analysis of NK-cell related responses, an ELISA-based assay was used. Therefore, 96-well ELISA plates (Thermo Fisher) were coated with SARS-CoV-2 S at 37°C for 2h. Plates were then washed and blocked with 5% BSA in PBS overnight at 4°C. NK cells were isolated from buffy coats from healthy donors (MGH blood donor center) using the RosetteSep isolation kit (Stem Cell Technologies) and NK cells were rested overnight supplemented with IL-15 (Stemcell). Serum samples were diluted 1:50 and incubated at 37°C for 2h on the ELISA plates. A staining cocktail of anti-CD107a-PE-Cy5 stain (BD), brefeldin A (Sigma), and GolgiStop (BD) was added to the NK cells and 5×104 NK cells per well were added and incubated for 5h at 37°C. NK cells were fixed and permeabilized using Perm A and B (Thermo Fisher) and surface markers were stained for with anti-CD16 APC-Cy7 (BD), anti-CD56 PE-Cy7 (BD) and anti-CD3 AlexaFluor 700 antibodies (BD). Intracellular staining included anti-IFNγ APC (BD) and anti-MIP-1β PE (BD). Acquisition occurred by flow cytometry iQue (Intellicyt), equipped with a robot arm (PAA). NK cells were defined as CD3-, CD16+ and CD56+. The ADNKA assay was performed in duplicate across two blood donors.
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5

Flow Cytometric Analysis of Antibody-Dependent NK Cell Activation

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Natural killer cell (NK) activation and degranulation via CD107a, IFN-γ and MIP-1β detection was assessed via an ELISA-based antibody-dependent natural killer (NK) cell activation assay [52 (link)]. ELISA plates (Thermo Fisher NUNC MaxiSorp flat bottom) were coated with gp140 ConS (200 ng per well) at 37°C for 2 h followed by blocking with 5% BSA in PBS overnight at 4°C. NK cells were isolated from buffy coats from healthy donors with RosetteSep (Stem Cell Technologies) and rested over night with 1 ng/ml IL-15. The next day, after washing the blocked ELISA plates, 50 μl of samples at a 1:25 dilution in PBS were added to each well. Plates were incubated at 37°C for 2 h to allow immune complex formation. Then, 5×104 NK cells with anti-CD107a-PE-Cy5 stain (BD), brefeldin A (5 mg/ml) (Sigma), and GolgiStop (BD) were added to each well and incubated for 5 h at 37°C. NK cells were fixed and permeabilized using Perm A and B solutions (ThermoFisher). Cells were subsequently stained for surface markers with anti-CD16 APC-Cy7 (BD), anti-CD56 PE-Cy7 (BD) and anti-CD3 AlexaFluor 700 (BD). Intracellular staining included anti-IFNγ FITC (BD) and anti-MIP-1β PE (BD). Acquisition occurred by flow cytometry (IntelliCyt, iQue Screener plus). NK cells were defined as CD3- and CD56+. The antibody-dependent NK cell degranulation assay was performed in duplicate across two blood donors.
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6

NK Cell Degranulation and Cytokine Assay

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Human NK cells were isolated from buffy coats using RosetteSep NK cell enrichment kit (STEMCELL Technologies) and Ficoll separation. The isolated NK cells were rested overnight at 1.5 × 106 cells/mL in IL-15 at 37°C. ELISA plates were coated with antigen at 300 ng/well and incubated for 2 hours at 37°C. Plates were blocked with 5% BSA in PBS overnight at 4°C. The next day, 100 μL of antibodies at a concentration of 5, 1 or 0.2 μg/mL, were added to the plates. Plates were incubated for 2 hours at 37°C to form immune complexes. After the incubation, NK cells were added to the plates at 5 × 104 cells/well in R10 supplemented with anti-CD107a PE-Cy5, BFA and GolgiStop (BD Biosciences). Plates were incubated for 5 hours at 37°C. Following the incubation, NK cells were stained for surface markers with anti-CD56 PE-Cy7, anti-CD16 APC-Cy7 and anti-CD3 Pacific Blue (BD Biosciences). NK cells were fixed and permeabilized with Fix & Perm cell permeabilization kit (Invitrogen™). Cells were incubated with anti-MIP1β PE and anti-IFNγ FITC (BD Biosciences) to stain for intracellular markers. Cells were acquired on an Intellicyt iQue Screener.
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7

Phenotypic Profiling of NK Cells

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To compare the surface expression of CD16, CD69, and CD161 on NK cells at the whole range and single-cell level, PBMCs of healthy donors were pre-incubated with cytokines for 12 h and then washed with PBS. All samples were stained with anti-CD3 eFluor 450 (ebioscience, clone UCHT1), anti-CD16 APC-Cy7 (BD, clone 3G8), anti-CD56 PE-Cy7 (BD, clone B159), anti-CD69 APC (BD, clone FN50), and anti-CD161 PE-Cy5 (BD, clone DX12). All antibodies were purchased from BD Biosciences (San Diego, CA, USA) except anti-CD3 from eBiosciences (San Diego, CA, USA). NK cells were defined as phenotype of CD3CD56+ and the frequencies of CD16, CD69 and CD161+ NK cells were analyzed. CD16/CD69/CD161 expressions on NK cells were acquired on BD FACS Fortessa (BD Biosciences, USA) and then analyzed by FlowJo software (Treestar, Ashland, OR, USA).
The prepared samples were also run on ImageStream χ MarkII system (Amnis Corporation, Seattle, WA, USA) to acquire the data of CD16/CD69/CD161 expressions on single-cell. Twenty thousand events were collected for each sample and single-color control was used to create a compensation matrix to correct for spectral overlap. Collected data were analyzed using IDEAS 3.0 software (Amnis Corporation, Seattle, WA, USA).
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8

Immune Cell Phenotyping by Flow Cytometry

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Blood and tissue were processed, stained, and sorted via FACS using antibody cocktail including anti-CD45 BB515 (BD Horizon), anti-CD14 PerCP-Cyanine5.5 (eBioscience), anti-HLA-DR eFlour 450 (eBioscience), anti-CD15 APC (Biolegend), anti-CD16 APC-Cy7 (BD Biosciences), anti-CD1c PE (Miltenyi Biotec), anti-CD20 Alexa Flour 700 (BD Biosciences), anti-CD56 PE-Cy7 (BD Biosciences). Cell sorting was performed on the FACSAria III (BD Bioscience) at Northwestern University RLHCCC Flow Cytometry Core Facility.
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9

SARS-CoV-2 S Protein-Induced NK Cell Responses

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For analysis of NK-cell related responses, an ELISA-based assay was used. Therefore, 96-well ELISA plates (Thermo Fisher) were coated with SARS-CoV-2 S at 37°C for 2h. Plates were then washed and blocked with 5% BSA in PBS overnight at 4°C. NK cells were isolated from buffy coats from healthy donors (MGH blood donor center) using the RosetteSep isolation kit (Stem Cell Technologies) and NK cells were rested overnight supplemented with IL-15 (Stemcell). Serum samples were diluted 1:50 and incubated at 37°C for 2h on the ELISA plates. A staining cocktail of anti-CD107a-PE-Cy5 stain (BD), brefeldin A (Sigma), and GolgiStop (BD) was added to the NK cells and 5×104 NK cells per well were added and incubated for 5h at 37°C. NK cells were fixed and permeabilized using Perm A and B (Thermo Fisher) and surface markers were stained for with anti-CD16 APC-Cy7 (BD), anti-CD56 PE-Cy7 (BD) and anti-CD3 AlexaFluor 700 antibodies (BD). Intracellular staining included anti-IFNγ APC (BD) and anti-MIP-1β PE (BD). Acquisition occurred by flow cytometry iQue (Intellicyt), equipped with a robot arm (PAA). NK cells were defined as CD3-, CD16+ and CD56+. The ADNKA assay was performed in duplicate across two blood donors.
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10

Quantifying NK Cell Activation

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ELISA plates were coated with antigen at 300 ng/well and incubated for 2 h at 37 ˚C. Plates were blocked with 5% BSA in PBS overnight at 4 ˚C. The next day, 100 μL of diluted sample were added to the plates. Plates were incubated for 2 h at 37 ˚C to form immune complexes. During the incubation, human NK cells were isolated from buffy coats using RosetteSep NK cell enrichment kit (StemCell Technologies #15065) and Ficoll separation. After the incubation, NK cells were added to the plates at 5 × 104 cells/well in R10 supplemented with anti-CD107a PE-Cy5 (1:80 dilution), GolgiStop and Brefeldin A (BD Biosciences,#554724, #555802, Sigma #B7651). Plates were incubated for 5 h at 37˚C. Following the incubation, NK cells were stained for surface markers with anti-CD56 PE-Cy7, anti-CD16 APC-Cy7 and anti-CD3 Pacific Blue (1:200 dilution) (BD Biosciences, #557747, #557758, #558124). NK cells were fixed and permeabilized with Fix&Perm cell permeabilization kit (Invitrogen). Cells were incubated with anti-MIP1β PE (1:200 dilution) and anti-IFNγ FITC (1:80 dilution) (BD Biosciences, #550078, #340449) to stain for intracellular markers. Cells were acquired on a Stratedigm 1300EXi cytometer.
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