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4 protocols using n tosyl l phenylalanine chloromethyl ketone trypsin

1

Influenza A Virus Propagation and Titration

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Influenza A virus (H1N1 strain PR8), which was a kind gift from Dr. Genhong Cheng (University of California, Los Angeles), was propagated in the allantoic cavities of 11‐day‐old specific pathogen‐free embryonated chicken eggs at 35°C. Freshly collected allantoic fluids were clarified by low‐speed centrifugation at 72 h postinoculation and then stored in small aliquots at −80°C. The virus titers were determined using a plaque‐forming assay in monolayers of Madin‐Darby canine kidney (MDCK) cells.
For the TCID50 assay, the IAV virus sample from infected HT‐29 cells was diluted in DMEM containing 1 μg/ml N‐tosyl‐L‐phenylalanine chloromethyl ketone‐trypsin (Sigma), 0.3% bovine albumin (Sigma), 1% penicillin/streptomycin, and 25 mM HEPES buffer (Gibco) across a 96‐well tissue culture plate with MDCK cells. After 48–72 h, TCID50 titer per 100 μl was determined using the Reed‐Muench method (Lei et al, 2021 (link)).
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2

VLP-based Influenza Virus Entry Assay

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VLPs harboring BlaM1 fusion proteins were produced essentially as described before (Tscherne et al., 2010 (link)). Briefly, HEK 293T cells seeded onto poly-L-lysine–coated (Sigma-Aldrich) 6-well plates were transfected in Opti-MEM (Gibco) with 2.5 µg BlaM1, 500 ng pCAGGS-WSN-HA, 1.125 µg pCAGGS-WSN-NA, 250 ng pCAGGS-WSN-M2, and 300 ng pCAGGS-IFITM3, pCAGGS-IFITM1, or pCAGGS per well using ViaFect (Promega) as the transfection reagent (2.5 µl ViaFect/µg DNA). Medium was exchanged 8 h after transfection. VLPs were harvested 72 h after transfection and treated with 6 µg/ml N-tosyl-L-phenylalanine chloromethyl ketone trypsin (Sigma-Aldrich) for efficient HA cleavage. For infection of MDCKII, MDCK control, or MDCK-IFITM3 cells, IAV-VLP input was normalized by Western blotting for BlaM1 using the mouse monoclonal anti-IAV M1 (HB-64; American Type Culture Collection) antibody. At 4 h after infection, cells were harvested by trypsinization and incubated with the fluorogenic substrate CCF2-AM (Thermo Fisher Scientific). Cells were analyzed on a FACSVerse System (BD Biosciences) and dead cells were excluded by a live/dead staining (LIVE/DEAD Fixable Near-IR Dead Cell Stain Kit; Thermo Fisher Scientific).
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3

Trypsin Digestion of Coomassie-Stained Proteins

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The bands detected using Coomassie brilliant blue‐G250 were collected and incubated with 30% acetonitrile in 0.1% trifluoroacetic acid until the color disappeared. We then modified the proteins through alkylation with 10 mm dithiothreitol and 50 mm monoiodoacetic acid. The modified proteins were digested overnight with 10 ng·μL−1 N‐tosyl‐l‐phenylalanine chloromethyl ketone‐trypsin (Sigma‐Aldrich) in 100 mm ammonium bicarbonate at 37 °C. For desalting, we loaded the digested proteins into ZipTip C18 pipette tips (Millipore, Billerica, MA, USA) and eluted them with 0.1% trifluoroacetic acid (TFA)/acetonitrile (1 : 2, v/v). Next, we performed mass spectrometry on a Bruker Autoflex (Bruker Daltonics, Bremen, Germany). We mixed the digested samples with an equal volume of saturated α‐cyano‐4‐hydroxycinnamic acid (α‐CHCA) (Sigma‐Aldrich) in 0.1% TFA/acetonitrile (1 : 2, v/v) and applied them to a target plate. We obtained the spectra in the positive mode and analyzed them with FLEXAnalysis (Bruker Daltonics). We used the Mascot program (Matrix Science, London, UK) to conduct database searches.
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4

Isolation and Passage of Influenza Viruses

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We used influenza viruses D/bovine/C00046N/Mississippi/2014 virus (D/46N) and D/bovine/C00013N/Mississippi/2014 virus (D/13N). Before use, the viruses were isolated and passaged twice in HRT-18G cells (American Type Culture Collection, Manassas, VA, USA) with Opti-MEM supplemented with 1× Pen Strep and 12.5× 7.5% bovine serum albumin (GIBCO Life Technologies, Carlsbad, CA, USA) and 1:2000 N-tosyl-L-phenylalanine chloromethyl ketone-Trypsin (Sigma-Aldrich, St. Louis, MO, USA).
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