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6 protocols using inova instrument

1

Characterization of Organic Compound

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The UV spectrum (200–500 nm) was measured using a PerkinElmer Lambda-25 UV spectrophotometer. IR spectra (200–4,000 cm-1) were recorded on an FT–IR PerkinElmer RX-1 spectrometer. The mass spectrum was recorded using a micromass Quattro II triple quadrupole mass spectrometer. 1H and 13C nuclear magnetic resonance (NMR) spectra were obtained using a 300 MHz Varian Inova instrument in deuterated water (D2O). Elemental analysis was performed using a Carlo Erba 1106 CHNO/S elemental analyzer. The melting point was determined using a WRS-1B digital melting-point apparatus (Singh et al., 2013 (link)).
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2

NMR Spectroscopy Characterization Protocol

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NMR spectra were recorded on a Varian Inova instrument (500 MHz) at 25 °C in CDCl3, and CD3OD using tetramethyl silane (TMS) as an internal standard. The NMR solvents CDCl3 and CD3OD were purchased from Cambridge Isotope Laboratories (Tewksbury, MA, USA). Chemical shifts (δ) were reported in parts per million (ppm) and coupling constant values (J) in Hertz (Hz) relative to CDCl3 (1H, δ 7.26; 13C, δ 77.00) or CD3OD (1H, δ 3.4, 4.8; 13C, δ 49.3) and tetramethyl silane. The following abbreviations were used for signal multiplicities: s = singlet; d = doublet; t = triplet; q = quartet, and m = multiplet. All other solvents were of reagent grade and were purchased from Kanto Chemical (Tokyo, Japan). ESI-MS spectra were recorded on a JEOL JMS-T100LP spectrometer (JEOL, Akishima, Japan). Melting points were measured on a Micro Melting Point Apparatus (Yanaco Co., Ltd., Kumiyama, Japan). Analytical thin-layer chromatography (TLC) was performed on 0.2 mm silica gel plates (Merck 60 F-254), (Darmstadt, Germany), developed with CHCl3:MeOH:H2O (65:35:10, lower phase) and sprayed with a mixture of 5% ammonium molybdate and 1% cerium (IV) sulphate in 3.6 N H2SO4 (Hanessian stain solution), or viewed with a handheld UV lamp (UVGL-58) at 254 nm.
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3

Solvent Removal and Characterization of Compounds

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All chemicals were purchased from Sigma-Aldrich Chemical Co. The solvent was removed at aspirator pressure using a rotary evaporator. TLC was performed with Merck precoated TLC plates, and the compounds were made visible using a fluorescent inspection lamp and iodine vapor. Gravity chromatography was done with Merck silica gel 60 (mesh size 63–200 μm). Nuclear magnetic resonance spectra were recorded on a Varian Inova instrument, operating at 500 MHz for 1H NMR and 75 MHz for 13C NMR. Chemical shifts (δ) for 1H NMR spectra are reported in ppm downfield relative to the center line of CDCl3 triplet at 7.26 ppm. Chemical shifts for 13C NMR spectra are reported in ppm downfield relative to the center line of CDCl3 triplet at 77.23 ppm. The abbreviations s, d, t, and m stand for the resonance multiplicities singlet, doublet, triplet, and multiplet, respectively. 13C spectra, are 1H decoupled, and multiciplities were determined by APT pulse sequence. The melting points were recorded on a Boëtius hot plate microscope. FT-IR spectra were recorded on FT-IR Shimadzu spectrometer (4000–400 cm−1. EI-MS and HRMS were performed with Finnigan MAT 95, EI: 70 eV, R:10000.
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4

Isolation and Characterization of Antifungal Compound

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Biomass was separated from the fermented culture by centrifuging it at 11,110xg for 20 min. The supernatant was extracted with chloroform and the organic layer containing active metabolites was collected and evaporated under reduced pressure. The residue was purified by silica gel (mesh size: 230–400) column chromatography using increasing gradient of methanol-chloroform (0–50%) as an elutant. The collected fractions were tested for antifungal activity by disc diffusion method against Candida albicans ATCC 24433. The fractions showing similar antifungal activity were pooled together and again subjected to silica gel column chromatography using mesh size 230–400. Purity of the fractions showing significant antifungal activity was further examined by high pressure liquid chromatography (HPLC) using analytical C-18 silica column (Lachrom) at a flow rate of 1 ml/min with Merck system at 254 nm. Finally the chemical structure of the compound was established with the help of UV (Perkin Elmer Lambda- 25 UV spectrophotometer), IR (FT-IR Perkin Elmer RX-1 spectrometer), ESMS (Micromass Quattro II triple quadrupole mass spectrometer) and 1H and 13C NMR spectra (600 MHz VARIAN INOVA instrument).
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5

600 MHz 1H NMR Spectroscopy Protocol

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1H NMR spectra were recorded at 25 °C on a Varian Inova instrument (equipped with a reverse triple resonance probe) operating at 600.13 MHz. Each 1H NMR spectrum consisted of 256 scans (corresponding to 16 min) with a relaxation delay (RD) of 2 s, acquisition time of 0.707 s, and spectral width of 9595.8 Hz (corresponding to δ 16.0). All the 1H NMR spectra were uploaded onto Zenodo.
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6

Characterization of Glycol-based Nanostructures

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Heptaethylene Glycol (1) was purchased from Biomatrik Inc. (Jiaxing, Zhejiang, China) and used as it is. Amicon ultra tubes were purchased from Millipore Ltd. Most all other chemicals were purchased from Sigma-Aldrich (St. Louis, MO) and used as received. Tetrachloroauric acid (HAuCl4) was purchased from Strem Chemicals (Newburyport, MA). Agarose-bound galactose-specific peanut agglutinin (PNA) and mannose/glucose-specific Pisum sativumagglutinin (PSA) were purchased from Vector Labs (Burlingame, CA). Cell lines were purchased form ATCC, Manassas, VA, USA. NMR spectra were recorded on a Varian Inova instrument at 400 MHz with an inverse H-X probe. Liquid chromatography/Mass spectral (LC/MS) data were acquired on an Agilent 1100 in electrospray mode. Samples were analyzed for their sizes and zeta potentials in 10 mM NaCl at 25°C with a Malvern ZetaSizer NanoZS (Malvern Instruments Ltd, Westborough, MA) equipped with a 633 nm laser and a back-scattering detector in an automated mode. Hydrodynamic size of the samples was measured by using the Stokes-Einstein equation. The zeta potential of the samples was calculated from the electrophoretic mobility using the Smoluchowski approximation
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