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Superscript 3 one step qrt pcr kit

Manufactured by Thermo Fisher Scientific

The SuperScript III One-Step qRT-PCR kit is a laboratory reagent used for the quantitative real-time reverse transcription polymerase chain reaction (qRT-PCR) process. This kit combines the reverse transcription and PCR amplification steps in a single reaction, streamlining the workflow for gene expression analysis.

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3 protocols using superscript 3 one step qrt pcr kit

1

KOUTV Virus Propagation and Quantification

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The KOUTV strain utilized in this experiment was the KOUTV DAK Ar D 5443 received from Robert B. Tesh (CBEID-UTMB). Virus was propagated by inoculating 100 μL of viral stock into the T-75 flask of confluent Vero cells. To determine titer, a plaque assay was developed and standard curves created for quantitative reverse transcription polymerase chain reaction (qRT-PCR) as previously described.16 (link) Briefly, we utilized a SuperScript III One-step qRT-PCR kit (Invitrogen, Carlsbad, CA) with the primers and probes given in Table 1.
The presence of KOUTV viral RNA was detected via qRT-PCR using the following protocol: RT step (1 cycle) 48° C for 2 minutes and 95 °C for 2 minutes, amplification and data recording step (40 cycles) 95 °C for 15 seconds and 60 °C for 30 seconds. Primers were designed and obtained via Integrated DNA technologies with 5′-FAM fluorophore and 3′-Black-Hole quencher. Prior to offering virus to mosquitoes, virus was propagated into Vero cells. Viral standard curves and concentrations were obtained via plaque assay as described previously before the beginning of the experiment.16 (link)
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2

Extracting and Quantifying RNA from Prostate Cells

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RNA extracted from cultured prostate cells was prepared using the RNeasy Mini kit (QIAGEN) with DNase I digestion on the column. To extract RNA from mouse tumor tissues, these were first dissected to remove connective tissue and fat, and washed extensively with 1X PBS to remove excessive blood or necrotic tissues. Tumors were then homogenized in RLT RNA lysis buffer using a Dounce homogenizer, and passed through a QIAshredder column (QIAGEN). RNA from normal prostate of FVB mice were prepared following a similar method. RNA from tissue homogenate was extracted using the RNeasy Mini kit (QIAGEN) with DNase I digestion on the column. cDNA was synthesized from 50–200 ng RNA using SuperScript III One-Step qRT-PCR kit (Invitrogen). qPCR was performed using the primers listed in Table S3.
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3

Extracting and Quantifying RNA from Prostate Cells

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RNA extracted from cultured prostate cells was prepared using the RNeasy Mini kit (QIAGEN) with DNase I digestion on the column. To extract RNA from mouse tumor tissues, these were first dissected to remove connective tissue and fat, and washed extensively with 1X PBS to remove excessive blood or necrotic tissues. Tumors were then homogenized in RLT RNA lysis buffer using a Dounce homogenizer, and passed through a QIAshredder column (QIAGEN). RNA from normal prostate of FVB mice were prepared following a similar method. RNA from tissue homogenate was extracted using the RNeasy Mini kit (QIAGEN) with DNase I digestion on the column. cDNA was synthesized from 50–200 ng RNA using SuperScript III One-Step qRT-PCR kit (Invitrogen). qPCR was performed using the primers listed in Table S3.
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