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4 protocols using axiovs 40 4

1

Quantifying Microglial Activation in Brain Tissue

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Brain sections (50 μm) were cut and co-incubated with primary Iba1 antibody (Fujifilm Wako, 019-19741) overnight at 4 °C. Secondary Alexa Fluor 488 goat anti-rabbit IgG was added for 2 h followed by mounting of sections with DAPI (Invitrogen, 36935). Fluorescent images were acquired on a Zeiss Observer and images were processed using AxioVs 40 4.8.0.0 software (Carl Zeiss). Photographs were acquired using an AxioCam MRm digital camera. The analysis of the microglial cells was performed utilizing AxioVision, imageJ and Fiji software. For the calculation of the Iba1 intensity the images were processed using several imageJ functions and the resulting image was saved and re-opened in AxioVision software, where AxioVision Wizard macros was applied to calculate the area and the intensity of the Iba1 staining. For the evaluation of the Iba1 expression, the area of the staining was multiplied by the staining intensity resulting in the total staining parameter (Area X Intensity = Total staining) expressed in artificial units (AU).
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2

Cocaine-Induced Microglial Activation and TLR2 Expression

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Male C57BL/N mice (25 to 30 g) were randomly separated into two groups (n = 6/group). One group was administered cocaine (20 mg/kg, IP) daily for 7 days and sacrificed 1 h after the final injection. Mice similarly treated with 0.9 % saline of the same volume served as controls. Animals were transcardially perfused with the fixative, and immunohistochemical procedures were performed as described below. Floating tissue sections (30-μM-thick) were co-incubated with primary anti-mouse ionized calcium-binding adapter molecule 1 (Iba1) (Abcam, Cat# ab15690), anti-rabbit TLR2, anti-goat Iba1 (Abcam, Cat# ab5076), and anti-mouse CD68 antibody (Dako, Cat# M0814) overnight at 4 °C. Alexa Fluor 488 conjugated anti-mouse or anti-goat (Life Technologies, Cat# A11001; Invitrogen, Cat# A11055) and Alexa Fluor 594 goat anti-rabbit secondary antibodies (Invitrogen, Cat# A11008) were added for 2 h to detect Iba1 and TLR2 followed by mounting of sections with DAPI (Invitrogen, 36935). Fluorescent images were acquired at room temperature on a Zeiss Observer Z1 inverted microscope (Carl Zeiss, German); images were processed using AxioVs 40 4.8.0.0 software (Carl Zeiss MicroImaging). Photographs were acquired using an AxioCam MRm digital camera (Carl Zeiss, German).
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3

Immunohistochemical Analysis of Microglial Activation

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Animals were perfused, and immunohistochemical procedures were performed as described later. Rapidly frozen sections with 20 μM were co-incubated with primary anti-AIF1 antibody (Wako Pure Chemical Industries, Chuo-ku, Osaka, Japan, 019-19741) and anti-LAMP2 antibody (Santa Cruz Biotechnology, Dallas, TX, USA, sc-19991) overnight at 4°C. Secondary AlexaFluor 488 goat anti-rabbit IgG (A-11008) or AlexaFluor 594 goat anti-mouse (A-11032) from Thermo Fisher Scientific Waltham, MA, USA, was added for 2 h to detect Iba1 and LAMP2, followed by mounting of sections with prolong gold antifade reagent with 4,6-diamidino-2-phenylindole (Thermo Fisher Scientific, Waltham, MA, USA, P36935). Fluorescent images were acquired on a Zeiss Observer. AxioVs 40 4.8.0.0 software (Carl Zeiss, Thornwood, NY, USA) was used to process the images.
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Immunohistochemical Analysis of Neuroinflammation

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Animals were perfused with 4% PFA and brains removed for histology. Rapidly frozen 30 µM brain sections were incubated with primary CD11b antibody (Bio-Rad, MCA711G) or GFAP, NLRP3 overnight at 4 °C. Secondary Alexa Fluor 488 goat anti-rabbit IgG (Invitrogen, A-11008) or Alexa Fluor 594 goat anti-mouse (Invitrogen, A-11032) was added for 2 h, followed by the mounting of sections with DAPI (Invitrogen, 3693). Fluorescent images were acquired at room temperature on a Zeiss Observer. A Z1 inverted microscope (Carl Zeiss, Oberkochen, Germany) was used; images were processed using AxioVs 40 4.8.0.0 software (Carl Zeiss MicroImaging, Oberkochen, Germany). Photographs were acquired using an AxioCam MRm digital camera (Carl Zeiss, Oberkochen, Germany).
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