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2 protocols using dna loading buffer 6

1

CRISPR-Cas12a Reaction Optimization

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Oligonucleotides were purchased from Beijing Genomics Institution (Beijing, China), Tsingke Biotechnology Co. Ltd (Beijing,China), and Sangon Biotech. Co. Ltd (Shanghai, China). Lba Cas12a (Cpf1, 20 μM) and rCutSmart buffer (50 mM potassium acetate, 20 mM Tris-acetate, 10 mM magnesium acetate, 100 μg/ml bovine serum albumin (BSA), pH 7.9)) were ordered from MAGIGEN (Guangzhou, China) and New England Biolabs (Beijing, China). Large Fragment Bst DNA polymerase, 10× Bst Reaction Bufffer (200 mM Tris-HCl, 100 mM KCl, 100 mM (NH4)2SO4, 20 mM MgSO4, 1% Triton X-100) and 100 mM MgSO4 were bought from New England Biolabs (Beijing, China). dATP (100 mM), dTTP (100 mM) and dCTP (100 mM) were bought from Sangon Biotech. Co. Ltd (Shanghai, China). Dithiothreitol (DTT) was ordered from Sangon Biotech. Co. Ltd (Shanghai, China). N,N,N′,N′-Tetramethylethylenediamine (TEMED) and 30% acrylamide/bis solution were provided by Sigma-Aldrich (St. Louis, MO, USA). DNA loading buffer (6×) and Gel Red nucleic acid dye were ordered from TaKaRa Biotech (Dalian, China). All chemical reagents were of analytical grade, and RNase-free water was used throughout this study.
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2

CRISPR-Cas12a Nucleic Acid Assay Protocol

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EnGen®Lba Cas12a (Cpf1, 100 μM, 20 μM) and CutSmart buffer [50 mM potassium acetate, 20 mM Tris-acetate, 10 mM magnesium acetate, 100 μg/ml bovine serum albumin (BSA), pH 7.9)] were ordered from New England Biolabs and MAGIGEN. The TranscriptAid T7 High Yield Transcription Kit and the RNeasy MinElute Cleanup Kit were obtained from ThermoFisher Scientific and Qiagen, respectively. Deoxynucleotide triphosphates (dNTPs), SYBR Green, diethylpyrocarbonate (DEPC)-treated water, eight strip real-time PCR tubes and caps, magnesium chloride, reporter, DNA sequences, uracil-DNA glycosylase (UDG) and PCR mix were purchased from Sangon Biotech Inc. (Shanghai, China) and Tsingke Biotechnology Co., Ltd (Beijing, China). The crRNAs used were synthesized with the TranscriptAid T7 High Yield Transcription Kit or obtained from Beijing Genomics Institution (Beijing, China). The nucleic acid extraction and purification kit was purchased from Burning Rock Biotech Ltd. (Guangzhou, China). N,N,N',N'-Tetramethylethylenediamine (TEMED) and 30% acrylamide/bis solution were provided by Sigma-Aldrich (St. Louis, MO, USA). DNA loading buffer (6×) and Gel Red nucleic acid dye were ordered from TaKaRa Biotech (Dalian, China). All chemical reagents were of analytical grade, and RNase-free water was used throughout this study.
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