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P nitrophenyl phosphate

Manufactured by New England Biolabs
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P-nitrophenyl phosphate is a colorless substrate used in enzymatic assays to detect the presence of phosphatase enzymes. When cleaved by phosphatase enzymes, it produces a yellow-colored product, p-nitrophenol, which can be measured spectrophotometrically to quantify the enzyme activity.

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6 protocols using p nitrophenyl phosphate

1

Phosphatase Regulation of CaMKII Phosphorylation

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To test how the presence of phosphatase affects the phosphorylation status of CaMKII when the kinase is active, increasing amounts of λ-phosphatase (200–800 units, New England Biolabs) and 1 mM MnCl2 was added to samples of glass-immobilized CaMKII, in the presence of activation buffer containing 5 μM Ca2+/CaM. 1 unit of λ-phosphatase is defined as the amount of enzyme that hydrolyzes 1 nmol of p-nitrophenyl phosphate in 1 min at 30°C (New England Biolabs). After 45 min of incubation, the flow chambers were washed with 2 mL DPBS to remove the λ-phosphatase and the activation buffer. The phosphorylation of Thr 286 and Thr 305/306 was then examined using the immunofluorescence assay described above. No further reduction in phosphorylation was observed upon adding more than 400 units of λ-phosphatase and this is considered as a saturating amount of phosphatase.
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2

Preparation and Analysis of PP1γ Enzyme

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ATP, Mops, HEPES, Tris, MgCl2, MnCl2, NaCl, EDTA, NP40, Brij 35, glycerol, sucrose, acetic acid, lysozyme, DNAse, RNAse, Phenix imaging film, BSA, Protein G–agarose Ni-resin and liquid scintillant were obtained from Fisher Scientific. γ32P-ATP was obtained from NEN Products. p-Nitrophenyl Phosphate and 10xPMP buffer (500 mM HEPES, 1 M NaCl, 20 mM DTT, 0.1% Brij 35) were purchased from NEB. Protease inhibitor cocktail was obtained from Roche and anti-PP1γ monoclonal antibody was purchased from Thermo, and anti-GFP monoclonal antibody was purchased from Cell Signaling. InstantBlue was purchased from Expedeon, Hybond ECL nitrocellulose blotting membrane was purchased from Amersham.
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3

Phosphatase Activity Assay for SapM

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SapM activity was assayed as described previously (Saleh and Belisle, 2000 (link); Zulauf et al., 2018 (link)). In a 96 well plate, 3 µg of CFP protein was diluted with water and added to 10X buffer (1M Tris base pH 6.8) with 20 mM Sodium tartrate to reduce background phosphatase activity, and 50 mM p-nitrophenyl phosphate (pNPP) for a total volume of 200 µL (New England Biolabs, Ipswich, MA). Tartrate is an inhibitor of some phosphatases, but SapM activity is unaffected by tartrate (Saleh and Belisle, 2000 (link)). Despite the addition of tartrate, the phosphatase assay used is not specific for SapM. The residual activity in the ∆secA2 and ∆satS mutants can be attributed to SatS-independent phosphatases. The plate was incubated at 37°C in a plate reader, and the absorbance at 405 nm was measured every three minutes for four hours. Over the linear portion of the kinetic assay, we calculated the rate of pNPP conversion by calculating the slope of the line generated by plotting Abs405 nm as a function of time. These slopes were then normalized to the WT rate of change, which we set to 100%.
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4

AMP-Activated Protein Kinase Purification and Assay

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LKBtide, Cat# 12-540, donepezil hydrochloride, ≥98%, Cat# D6281; phenformin hydrochloride, Cat# P7045; and berberine chloride, Cat# B3251, were from Sigma-Aldrich; p-nitrophenyl phosphate was from New England Biolabs, Ipswich, MA, USA, Cat# PO757S. BAY-3827 and BAY974 were from the Structural Genomics Consortium, Toronto, ON, Canada, (donated chemical probes); MK-8722 was synthesized in-house, as in [50 ]. SBI-0206965 was from Selleckchem, Houston, TX, USA, Cat# S7885. Acetonitrile (LC:MS grade), Cat# A19862.AP and formic acid (LC:MS grade), Cat# 270480250) were from ThermoFisher Scientific, Waltham, MA, USA. AMPK was purified from rat liver, as in [8 (link)]. Human (His)6-tagged AMPK (α1β2γ1, bacterially expressed, generated as in [51 (link)], was a gift from Dr Mark Peggie, University of Dundee, Dundee, UK; human (His)6-tagged AMPK (α2β2γ1, bacterially expressed) generated as in [51 (link)] was a gift from AstraZeneca, Cambridge, UK; human GST-tagged α2 kinase domain (1–310) was produced as described [44 (link)]; and human LKB1:STRAD-α:MO25-α complex [52 (link)], GST-tagged CaMKK2 [53 (link)], and PP2Cα (PPM1A) [54 (link)] were produced as described.
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5

TRAP Activity Colorimetric Assay

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Cell supernatants were collected after 5 days of differentiation, and TRAP activity was measured with a colorimetric assay. In short, p-nitrophenyl phosphate (New England Biolabs, Ipswich, MA, USA) was diluted in buffer containing 420 mM acetic acid (Sigma-Aldrich) and 160 mM tartrate solution (Merck, Kenilworth, NJ, USA) and added 1:1 to culture supernatant. After 1 hour, the reaction was stopped with 0.5 M NaOH (Sigma-Aldrich), and the absorbance at 405 nm was determined using a spectrophotometric plate reader (Bio-Rad Laboratories, Hercules, CA, USA).
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6

Quantitative TRAP Activity Assay

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Culture supernatants were collected after 7 days of differentiation and TRAP activity was measured with a colorimetric assay. Briefly, pnitrophenyl phosphate (NewEngland Biolabs) was diluted in buffer containing 420 mM acetic acid (Sigma-Aldrich) and 160 mM tartrate solution (Merck) and added 1:1 to culture supernatant. After 1 h, the reaction was stopped with 0.5 M NaOH (Sigma-Aldrich) and the absorbance at 405 nm was determined using a spectrophotometric plate reader (Bio-Rad Laboratories).
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