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7 protocols using a21058

1

Western Blot Protocol for FOXA1 Analysis

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Whole cell extracts were prepared in 50 mM Tris–HCl, 150 mM NaCl, 1% NP40, 10 mM NaF, 10% Glycerol, supplemented with protease inhibitor cocktail (Roche, 04,693,116,001) and quantitated using a BCA approach. 60 µg of protein was run on 10% acrylamide gels and transferred onto nitrocellulose membrane. Western blots were imaged on a LI-COR Odyssey system. Vinculin served as a loading control. Primary antibodies: FOXA1 (Santa Cruz Biotechnology, sc-6553, RRID:AB_2104865) and vinculin (Sigma-Aldrich, V4505, RRID:AB_477617). Secondary antibodies: anti-mouse alexa fluor 680 (Invitrogen, A21058, RRID:AB_2535724), and anti-goat alexa fluor 680 (Invitrogen, A21084, RRID:AB_2535741).
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2

Western Blot Detection Optimization

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Protein samples were run on 4–12% Bis-Tris gels (Life Technologies). After primary antibody incubation, blots were probed with 1:20,000 v/v dilution of either fluorescently labeled secondary antibodies (Life Technologies #A21058, Invitrogen #SA535571) in 2% bovine serum albumin in PBST or horseradish peroxidase-conjugated anti-rabbit secondary antibody (Veriblot Abcam #131366) in 5% non-fat milk in TBST for an hour at RT. Fluorescent images were developed using Odyssey. Veriblot-probed blots were treated with enhanced chemiluminescence substrate (Biorad #170–5060) for 5 min then developed on film. Original scans of all blots are included as a Source Data File.
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3

GSDMD Expression in LPS/Nigericin-Treated BMMs

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BMMs were treated with 100 ng/mL LPS for 3 hours, then with 15 μM nigericin for 30 minutes. Extracts from BMMs or bone marrow cells were prepared by lysing cells or cell pellets, respectively, with RIPA buffer (50 mM Tris, 150 mM NaCl, 1 mM EDTA, 0.5% NaDOAc, 0.1% SDS, and 1.0% NP-40) plus phosphatase inhibitors and Complete Protease Inhibitor Cocktail (Roche, Brighton, MA). Protein concentrations were determined by the Bio-Rad method, and equal amounts of proteins were subjected to SDS-PAGE gels (12%). Proteins were transferred onto nitrocellulose membranes and incubated with GSDMD antibody (1:1,000, ab209845, Abcam, Cambridge, MA) or β-actin (1:5,000, sc-47778, Santa Cruz Biotechnology, Dallas, Texas) overnight at 4°C, followed by a 1-hour incubation with secondary goat anti-mouse IgG (1:5,000, A21058, Thermo Fisher Scientific, Grand Island, NY) or goat anti-rabbit IgG (1:5,000, A21109, Thermo Fisher Scientific), respectively. The results were visualized using Li-Cor Odyssey Infrared Imaging System (LI-COR Biosciences, Lincoln, Nebraska).
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4

Western Analysis of MCC Progenitors

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Western analysis of MCC progenitors was performed by generating mutant and RNA-injected embryos as described above and then isolating the skin progenitors at stage 10.5 by removing the animal cap, trimming away marginal zone tissue, and culturing in 0.5× MMR. Multicilin-HGR was activated by treating with dexamethasone at stage 11, which is sufficient to drive most skin progenitors (~95%) into MCC differentiation (18 (link)). At the indicated stage equivalent, the animal cap tissue was collected and directly lysed with rigorous pipetting and vortexing in 2× lithium docecyl sulfate (LDS) sample buffer (Thermo Fisher Scientific, NP0008), followed by boiling for 10 min. The sample proteins were subjected to SDS–polyacrylamide gel electrophoresis and transferred to polyvinylidene difluoride membranes that were then blocked with 0.1% casein blocker (#161-0783, Bio-Rad) in 0.5× PBS for 30 min followed by overnight incubation with the indicated primary antibodies at 4°C in 0.1% Tween-20 in blocking buffer. After extensive washing in 0.1% Tween-20 in PBS, the blots were incubated with Alexa Fluor 680– or 800–conjugated secondary antibodies (Thermo Fisher Scientific, A21058, A21076, and A32735) for 45 min at room temperature, washed with 0.1% Tween-20 in PBS, and imaged using Odyssey (LI-COR) instrument. The primary antibodies used in this study are listed in table S6.
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5

GSDMD Protein Detection in Macrophages

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BMDMs and OCs were primed with 100 ng/mL LPS for 3 hours, then treated with 15 μM nigericin for 30 minutes. To collect proteins, cells or tissues were lysed with RIPA buffer (50 mM Tris, 150 mM NaCl, 1 mM EDTA, 0.5% NaDOAc, 0.1% SDS, and 1.0% NP-40) plus Complete Protease Inhibitor Cocktail and phosphatase inhibitors (Roche, South San Francisco, CA, USA). Protein concentrations from cell lysates and tissue lysates were determined by Bio-Rad method. Proteins were separated by SDS-PAGE (12%) and transferred to PVDF membrane. Proteins were stained with antibodies against GSDMD (1:1,000, ab209845, Abcam), or β-actin (1:5,000, sc-47778, Santa Cruz Biotechnology, Dallas, TX, USA) overnight at 4°C, followed by a 1-hour incubation with secondary goat anti-rabbit IgG (1:5,000, A21109, Thermo Fisher Scientific, Waltham, MA, USA) or goat anti-mouse IgG (1:5,000, A21058, Thermo Fisher Scientific, Waltham, MA, USA), respectively. The signals were developed using Li-Cor Odyssey Infrared Imaging System (LI-COR Biosciences, Lincoln, NE, USA).
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6

Western Blot Imaging Protocol

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Protein samples were run on 4–12% Bis-Tris gels (Life Technologies). After primary antibody incubation, blots were probed with 1:20,000 v/v dilution of fluorescently-labeled secondary antibodies (Life Technologies #A21058, #SA535571) in 2% BSA in PBST for an hour at room temperature. Fluorescent images were developed using the Odyssey Imager (LI-COR Biosciences). In Figure 1H, figure was generated from composite images taken from a single gel with no deletions for the purpose of lane alignment.
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7

Protein Expression Analysis by Western Blot

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Western blotting was performed as previously described [23] . Primary antibodies used were as collagen 1 (ab34710, Abcam, 1:500), periostin (sc-398,631, Santa Cruz, 1:500), apelin receptor (ab214369, Abcam, 1:500) and GAPDH (MAB374, Merck, 1:100,000). Secondary antibodies were from Life Technologies (Alexa Fluor A11371, A21058, and A21076) with 1:5000 dilution. Quantifications are shown as relative to loading control (GAPDH).
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