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7 protocols using pe cy7 conjugated anti cd3

1

Purification and Culture of Murine NK Cells

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For primary NK cells, single hepatic lymphocytes from 6- to 8-week-old C57BL/6 mice were labeled with PE-Cy7-conjugated anti-CD3, PE-conjugated anti-CD4, APC-conjugated anti-NK1.1 and APC-Cy7-conjugated anti-CD19 (BD PharMingen, United States). NK cells were sorted as cells that express NK1.1+CD3- using a FACS Aria I flow cytometer (BD Biosciences, United States) and the purity was higher than >95%. After purification, NK cells were cultured in a 96 round bottom wells (Costar, Corning Incorporated, Corning, NY, United States) in complete RPMI 1640 medium supplemented with 10% (v/v) fetal serum (Gibco, United States), 200 mg/ml glutamine, 50 μg/ml gentamycin, 100 units/ml penicillin, 100 μg/ml streptomycin (Sangon Biotech, Shanghai, China) and interleukin-2 (IL-2, 10 U/ml, BD PharMingen, United States).
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2

Activated T Cell Profiling Post-CS Exposure

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Immediately after CS exposure and lung removal, lung tissues were digested with collagenase and DNase (Sigma, St. Louis, MO, USA) to prepare single-cell suspensions by passing the dissociated tissue through a 70-μm cell strainer (BD Falcon). The suspensions of cells were stained in PBS containing 2% FBS with the following antibodies: FITC-conjugated anti-CD4, PE-Cy7-conjugated anti-CD3, APC-Cy7-conjugated anti-CD45, PE-conjugated anti-CD69, and APC-conjugated anti-CD8 antibodies (BD Bioscience). The cells were gated on FSC (forward scatter) and SSC (side scatter). The cells were then gated on SSC versus CD45 followed by SSC versus CD3 in order to gate on all T cells. The cells were further gated to obtain the percentage of CD4+ T and CD8+ T cells. Stained cells were examined on a FACS Canto flow cytometer (BD Bioscience, San Jose, CA, USA) and analyzed using FlowJo software (TreeStar, Ashland, OR, USA). The percentages of activated CD4+ T cells and activated CD8+ T cells were determined based on double positive cells (CD69+ CD4+ or CD69+ CD8+ cells) among total CD4+ or CD8+ T cells.
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3

Phenotypic Analysis of CD4+ T Cell Subsets

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Peripheral blood mononuclear cells (PBMCs) were isolated from whole blood by Ficoll centrifugation. The following monoclonal antibodies (mAbs) and reagents were used in this study: PE-Cy7-conjugated anti-CD3, APC-conjugated anti-CD3, APC-Cy7-conjugated anti-CD4, PE-conjugated anti-CD38, APC-conjugated anti-HLA-DR, APC-Cy7-conjugated anti-HLA-DR, FITC-conjugated anti-CD45RA, PerCP-Cy5.5-conjugated anti-CCR7 (BD Biosciences, USA); Violet-conjugated anti-CD38, FITC-conjugated anti-CD38, PE-Cy7 conjugated anti-CD25, APC conjugated anti-CD69, APC conjugated anti-CD127, Amcyan-conjugated anti-CD45RA (BioLegend, San Diego, CA, USA). For the expression of all markers, flow cytometric gating was defined using fluorescence minus one (FMO) controls. CD4+ T cell subsets were identified in terms of CD45RA and CCR7 expression. CD38 and HLA-DR were measured on gated CD4+ T cell subsets: naive CD4+ T cells (Tn, CD3+CD4+CD45RA+CCR7+), central memory CD4+ T cells (Tcm, CD3+CD4+CD45RACCR7+), and effector memory CD4+ T cells (Tem, CD3+CD4+CD45RACCR7). The expression of CD25, CD69, and CD127 were measured on gated CD38+ Tcm, HLA-DR Tcm, and CD4+HLA-DR+ cells. Data were collected using a BD LSRII flow cytometer (BD Biosciences) and analyzed using Flowjo software (TreeStar, USA).
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Flow Cytometry Analysis of Immune Cells

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Flow cytometric analysis was performed using blood samples collected before treatment (weeks 7–8 post-immunization) and at 2, 3, 5, 6, 7, and 8 weeks after treatment (weeks 9–10, 10–11, 13, 14, 15, and 16 post-immunization). All antibodies were purchased from BD Biosciences (San Jose, CA, USA). For analysis of T-cell populations, peripheral blood mononuclear cells (PBMCs) were stained with V500–conjugated anti-CD45 (BD Biosciences), PE-Cy7–conjugated anti-CD3, PerCP-Cy5.5–conjugated anti-CD4, APC-Cy7–conjugated anti-CD8, PE–conjugated anti-CD28, and APC–conjugated anti-CD95 antibodies. For analysis of B-cell populations, PBMCs were stained with V500–conjugated CD45, PE-Cy7–conjugated anti-CD3, FITC–conjugated anti-CD20, V450–conjugated anti-CD27, PerCP-Cy5.5–conjugated anti-CD21, PE–conjugated anti-IgD, and APC–conjugated anti-IgM antibodies. For analysis of regulatory T cells, PBMCs were stained with V500–conjugated anti-CD45, FITC–conjugated anti-CD4, PE-Cy7–conjugated anti-CD25, and PE–conjugated anti-FoxP3 antibodies. Flow cytometric analysis was carried out using a BD LSRFORTESSA cell analyzer (BD Biosciences).
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5

Immune Profiling of Residual Lymphoma in Mice

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At day 45 p.t.i. mice with residual primary lymphoma from CHOP×2 group (i.e. animals with partial response to chemotherapy) as well as PBS control, were sacrificed and tumors were removed and prepared as a single-cell suspension. Cells were immunostained at 4 °C in the dark for 30 min with the following panel of antibodies: FITC-conjugated anti-CD49b, PECy7-conjugated anti-CD8, APC-conjugated anti-CD3, APCCy7-conjugated anti-CD4, PerCPCy5.5-conjugated anti-CD19, FITC-conjugated anti-CD4, PE-conjugated anti-FoxP3, PECy7-conjugated anti-CD3, APC-conjugated anti-CD25, FITC-conjugated anti-Ly6C, PE-conjugated anti-Ly6G, (all reagents from BD Pharmingen, San Diego, CA). Optimal antibody concentration was previously defined by titration. For intracellular FoxP3 staining, cells were first stained with anti-CD4 and anti-CD25 antibodies, then fixed and permeabilized with a mouse FoxP3 buffer set (BD Pharmingen) according to the manufacturer’s protocols. Cells were washed twice with permeabilization buffer and then incubated with anti-FoxP3 at 4 °C for 30 min in the dark. Flow cytometry data were collected on a FACS Canto II flow cytometer equipped with two lasers (Becton–Dickinson, Oxford, UK). For data acquisition and analysis, FACSDiva (Becton–Dickinson) and Infinicyt (Cytognos, Spain) software were used.
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6

Tumor Infiltrating Immune Cells Analysis

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At day 45 p.t.i., five mice from PBS and LVR01x3 groups and five mice with residual lymphoma (partial response) from CHOPx2 and CHOPx2 + LVR01x3 were sacrificed and tumors were removed and prepared to obtain a single-cell suspension. 1 × 105 cells per tumor were immunostained at 4°C in the dark for 30 min with the following antibodies panel: FITC-conjugated anti-CD49b, PECy7-conjugated anti-CD8, APC-conjugated anti-CD3, APCCy7-conjugated anti-CD4, PerCPCy5.5-conjugated anti-CD19, FITC-conjugated anti-CD4, PE-conjugated anti-FoxP3, PECy7-conjugated anti-CD3, APC-conjugated anti-CD25, FITC-conjugated anti-Ly6C, and PE-conjugated anti-Ly6G (all reagents from BD Pharmingen, San Diego, CA, USA). The optimal antibody concentration was defined by titration. For Treg cells analysis, cells were first stained with anti-CD4 and anti-CD25 antibodies, then fixed and permeabilized with a mouse FoxP3 buffer set (BD Pharmingen) and then washed twice with permeabilization buffer and incubated with anti-FoxP3 at 4°C for 30 min in the dark. Flow cytometry data were collected on a FACS Canto II Cytometer (Becton–Dickinson, Oxford, UK). For data acquisition and analysis, FACSDiva (Becton–Dickinson) and Infinicyt (Cytognos, Spain) software were used, respectively.
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7

Multicolor Flow Cytometry Panel

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The following antibodies against hu-Ag were used: FITC-conjugated anti-CD3, -CD14, and -CD62L, PEconjugated anti-CD19, -CD16, -CD56, -CD45RA, -CCR4, and -CCR6, PerCP-Cy5.5-conjugated anti-HLA-DR, PE-Cy7-conjugated anti-CD3, APC-conjugated anti-CD3, -CD45, and -CCR6, Alexa-Fluor 647-conjugated anti-CD127, Alexa-Fluor 488-conjugated anti-Foxp3, APC-H7-conjugated anti-CD8 and -CD45RO, BV421conjugated anti-CD25 and -CXCR3, and V500-conjugated anti-CD4 (all from BD Pharmingen, San Diego, USA). Dead cells were excluded by 7AAD staining. For intracellular staining, Fixation/Permeabilization solution (eBioscience, San Diego, USA) was used. Multicolor cytometric analysis was performed on a FACS Canto II (BD Bioscience, New Jersey, USA) and data were analyzed by FlowJo software (FLOWJO LLC).
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