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Nb500 201

Manufactured by Novus Biologicals
Sourced in United States, Denmark

The NB500-201 is a laboratory equipment product offered by Novus Biologicals. It is a multichannel pipette designed for accurate and precise liquid handling in various scientific applications. The core function of this product is to facilitate the simultaneous transfer of multiple liquid samples in a single operation.

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10 protocols using nb500 201

1

Immunofluorescence Analysis of Survivin Expression

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Cells were grown on Matrigel-coated coverslips and immunofluorescence microscopy analysis was carried out as described previously (Ghule et al., 2007 (link)); cells were fixed with 3.7% formaldehyde for 30 min, permeabilized with 0.25% Triton X-100 for 20 min, and then incubated with primary antibody for 1 h at 37°C, followed by detection using the appropriate fluorescence dye–tagged secondary antibody. The nuclei were counterstained with DAPI (4′,6-diamidino-2- phenylindole). Cells were viewed under an epifluorescence Zeiss Axioplan 2 microscope, and images were captured using a Hamamatsu (C4742-95) charge-coupled-device (CCD) camera and analyzed using Metamorph imaging software (Universal Imaging, West Chester, PA). The following antibodies were used: anti-survivin (NB500-201, NB500-205, Novus Biologicals) at 1:250 and appropriate secondary antibodies conjugated with Alexa Fluor dyes at 1:800.
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2

Immunofluorescence Staining of γ-H2AX and Survivin

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Subconfluent cells plated on coverslips were fixed with 3.7% paraformaldehyde (BDH 29447) or in 100% cold methanol. For paraformaldehyde fixed cells, the cells were permeabilized with 0.1 %TritonX-100 in PBS for 15 min at RT and then incubated with blocking solution (1%BSA/10% goat-serum/0.3 M glycine/0.1% Tween in PBS) for 1 h at RT. The cells were incubated overnight at 4 C with the primary antibody as following: γ -H2AX (1:700, Abcam, ab2893-Phospho139, Rabbit) or anti-survivin (1:250, NB500-201, Novus Biological, Rabbit). The samples were incubated with secondary antibodies FITC anti-Rabbit (1:250, ab150077, AbCam) for 1 h at RT and then mounted with Pro-long anti-fade reagent (P7481, Life Technologies) with DAPI to stain the nuclei. The images were acquired with a Leica TCS NT confocal microscope.
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3

Immunohistochemical Analysis of PARP6 and Survivin

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The sections were incubated with a polyclonal anti-Survivin antibody (NB500-201, Novus Biologicals, Littleton, CO, 1:1000) and an anti-PARP6 antibody (HPA026991, Sigma-Aldrich, 1:500). In addition, to analyze the cell proliferation and correlate it with PARP6 and Survivin expression, we examined Ki-67 expression using an anti-Ki-67 monoclonal antibody (MIB-1, Dako). The sections were incubated with the primary antibodies overnight at 4°C after antigen retrieval by microwave treatment in citrate buffer (pH 6.0). The antibodies were detected with the streptavidin-biotin peroxidase system (Universal LSAB™2 kit, Dako, Kyoto, Japan). The immunohistochemistry grade was defined as - to +++ according to the number of stained cells and the intensity of the reaction in the individual cells. The grades were defined as follows: -, the majority of the cells were not positive; +, 5-20% of the tumor cells showed weak to moderate immunoreactivity; ++, 20-50% of the tumor cells showed moderate immunoreactivity; +++, over 50% of the tumor cells showed intense immunoreactivity. The PARP6- and Survivin-positive cases were graded as ++ or +++, and the negative cases were graded as - or +. A labeling index of the percentage of Ki-67-positive cells was determined by examining at least 1000 tumor cells in five representative areas at ×200 magnification.
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4

Immunohistochemical Analysis of Survivin Expression

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To examine the protein expression of survivin, immunohistochemistry was performed using a tissue array TH641 (US Biomax, Inc) with a rabbit polyclonal antibody (Novus Biologicals, NB500-201) at 1:500 dilution. Briefly, slides were deparaffinized in xylene and graded alcohols, and subjected to antigen retrieval in a pressure cooker with citrate buffer (pH6) for 20 minutes. Endogenous enzyme activity was blocked with 3% hydrogen peroxide in methanol with additional serum-free protein blocking to reduce nonspecific reactions. Subsequently, slides were incubated with primary antibody for 60 minutes at room temperature, and antigen–antibody reaction was detected with Dako Envision+ Dual Link system-HRP (Cat.K4061, Dako), visualized in 3,3'-diaminobenzidine, counterstained with hematoxylin, dehydrated, and coverslipped. The staining result was reviewed by a pathologist (A.R.).
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5

Mitotic Cell Synchronization and Protein Analysis

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Cells were synchronized in mitosis with STLC (10 µM) for 12–16 h and harvested by shake-off. Cells were lysed in extraction buffer (20 mM Tris, pH 7.4, 0.5% Triton X-100, 150 mM NaCl, 5 mM MgCl2, 2 mM EGTA, 1 mM DTT, 30 µg/ml DNase, 30 µg/ml RNase, and protease and phosphatase inhibitor cocktail) or boiled and sonicated in nuclear lysis buffer (20 mM Tris, pH 8, 10 mM EDTA, and 2% SDS). Cell lysates were resolved by SDS-PAGE and transferred to PVDF membranes. The following antibodies were used for Western blotting: mouse anti–Aurora B (1:500; AIM-1, 611083, clone 6; BD), mouse anti-His4 (1:2,000; 34670; Qiagen), rabbit anti-INCENP (1:500; Honda et al., 2003 (link)), rabbit anti-MCAK (1:1,000; Baron et al., 2016 (link)), mouse anti-MBP (1:10,000; E8032; New England Biolabs, Inc.), rabbit anti-Ska1 and anti-Ska2 (1:1,000; Hanisch et al., 2006 (link)), rabbit anti-Ska3 (1:1,000; Gaitanos et al., 2009 (link)), rabbit anti-Survivin (1:1,000; NB500-201; Novus Biologicals), and mouse anti–α-tubulin (1:3,000; T6199, clone DM1A; Sigma-Aldrich).
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6

Quantitative Protein Analysis of Cellular Stress Pathways

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Cells were harvested 72h after treatment and centrifuged at 500g for 5 min. media and trypsin was eluted and cells were resuspended in 50–100ul of RIPA buffer. A Pierce BCA protein assay kit (Thermo Scientific, Waltham, MA) was used according to manufacturer’s protocol to quantitate total protein in each sample. 20µg of protein sample was resolved using a SDS-page 15% acrylamide-bis gel and transferred to a nitrocellulose membrane (Advansta, San Jose, CA). Membrane was immunostained using rabbit polyclonal anti-survivin (NB500-201, NOVUS Biologicals, 1:1000) for detection of all survivin isoforms, mouse monoclonal anti-p53 (1:1000) (DO-1, sc126, Santa Cruz Biotech), mouse monoclonal anti-YY1 (1:1000) (H-10, sc-7341 Santa Cruz Biotech), rabbit polyclonal anti-sp1 (1:1000) (PEP-2 sc59, Santa Cruz Biotech) and loading controls rabbit monoclonal anti-β-actin (1:5000) (D6A8, Cell Signaling) and mouse monoclonal anti-GAPDH (1:1000) (O411, sc-47724, Santa Cruz Biotech). Dylight 800 Goat-anti-mouse IGG (1:20000) (SA535521, Invitrogen), and goat-anti-rabbit IGG antibodies (1:20000) (SA5-35571, Thermo Scientific) were used for secondary stain and quantitation via Odessey CL-x (LI-COR Lincoln, NE).
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7

In Situ Proximity Ligation Assay for Protein Interactions

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Cells were harvested, washed in PBS, and mounted onto slides by cytospin (Shandon Cytospin 3; Thermo Fisher) at 1,000 rpm for 5 min, were immediately fixed in 4% PFA (4% formaldehyde in PBS) on ice for 30 min and thereafter subjected to in situ PLA using Duolink Detection kit (Olink Bioscience, Uppsala, Sweden) according to the manufacturer's instructions for Duolink Blocking solution and Detection protocol. Briefly, slides were blocked, incubated with antibodies directed against mouse-anti EBNA1 (clone E1-2.5; Acris GmbH) and rabbit-anti Survivin (Novus biologicals; NB500-201) and thereafter incubated with PLA probes, which are secondary antibodies (anti-mouse and anti-rabbit) conjugated with oligonucleotides PLA probe minus and PLA probe Plus). Circularization and ligation of the oligonucleotides was followed by an amplification step. Slides were mounted using Vectashield (Vector Laboratories Inc, Burlingame, CA). Images were captured with a 63X lens on a Leica SP5 II Confocal microscope (Leica Microsystems) using LAS AF software for image processing and quantification. The number of foci, visualized as bright fluorescent signals, was counted in 10-15 cells/slide. n (number of slide) = 3
Additional Methods are provided in Supplemental Materials.
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8

Survivin Expression Suppression in Canine OSA Cells

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To determine if YM155 suppressed the endogenous expression of survivin in canine OSA
cells, adherent cells were exposed to YM155 at increasing concentrations (0−100 nM), and
the survivin expression was visualized by western blot analysis as previously described
[38 (link)]. The etoposide and/or YM155 treated cells
were subjected to immunoblotting using mouse anti-poly (ADP-ribose) polymerase (PARP)
(1:1,000; 611038; BD Biosciences), rabbit anti-survivin (1:1,000; NB500-201; Novus
Biologicals, Littleton, CO, U.S.A.), and mouse anti-actin (1:10,000; MAB1501; Millipore,
Billerica, MA, U.S.A.) antibodies.
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9

Quantifying Tumor Cell Proliferation and Survivin

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All tumor samples were analyzed immunohistochemically for the expression of Ki-67 and
survivin protein as previously described [40 (link)].
Antibodies used for immunostaining included mouse anti-human Ki-67 (clone MIB-1;
ready-to-use; IS-626; Dako, Glostrup, Denmark) and rabbit anti-survivin (1:800; NB500-201;
Novus Biologicals). The proliferation index and survivin expression were quantified as the
number of Ki-67- or survivin-positive nuclei (per 400 ×microscopic field) × 100 per total
number of nuclei, respectively; at least 1,000 cells were counted.
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10

Protein Expression Analysis by Western Blot

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Western blots were performed as previously described (Spaderna et al, 2008 (link)). A total of 40 μg of protein was separated by SDS–PAGE, transferred to nitrocellulose membrane, and immunoblotted using rabbit anti-ZEB1 (1:5,000, HPA027524; Sigma), rabbit anti-cleaved caspase-3 (1:1,000, 9664; Cell Signaling), rabbit anti-LC3BII (1:1,000, 3868; New England Biolabs), rabbit anti-survivin (1:1,000, NB500-201; Novus), mouse anti-E-cadherin (1:1,000, 610182; BD Biosciences), mouse anti-vimentin (1:1,000, M0725; Dako), rabbit anti-H3ac (1:2,000, 06-599; Millipore), rabbit anti-H4ac (1:1,000, 06-598; Millipore), and mouse anti-actin (1:5,000, A5441; Sigma) or mouse anti-tubulin (1:5,000, T6199, Sigma) to control loading efficiency.
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