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709 protocols using ab5694

1

Immunofluorescence analysis of ESCC cells

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ESCC cells were blocked with 3% BSA (Sigma) for 1 h at room temperature (RT), then incubated overnight with anti-p-STAT3 antibody (Abcam, ab5694), anti-STAT3 antibody (Abcam, ab5694), and anti-p-NF-κB antibody (Abcam, ab5694). After washing with PBS, cells were incubated with Cy3-labeled anti rabbit IgG or FITC-labeled anti rabbit IgG for 1 h at RT. The fluorescence images were captured using confocal microscope (Nikon).
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2

Western Blot Analysis of Protein Markers

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As the previously described [23 (link)], RIPA Lysis buffer (Beyotime, Shanghai, China) was used to extract total protein. Equal amount of protein was separated using 10% SDS-PAGE gel and then electro-transferred onto PVDF membranes (Invitrogen). The membranes were blocked with 5% nonfat milk followed by incubated overnight with primary antibodies at 4°C, including CD9 (1:2,000, ab92726, Abcam, Cambridge, MA, USA), CD63 (1:1,000, ab134045, Abcam), CD81 (1:2,000, ab109201, Abcam), ZO-1 (1:1,000, ab216880, Abcam), occludin (1:250, ab31721, Abcam), E-cadherin (1:10,000, ab40772, Abcam), α-SMA (1:1,000, ab5694, Abcam), Bcl-2 (1:1,000, ab194583, Abcam), Bax (1:1,000, ab32503, Abcam), cleaved caspase 3 (1:1,000, ab2302, Abcam), and β-actin (1:1,000, ab5694, Abcam). After further incubated with secondary antibody (1:50,000, ab205718, Abcam), the protein signals were visualized using Enhanced Chemiluminescence Detection Kit (Vazyme, Nanjing, China).
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Histological and Immunostaining Analysis of Liver

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The liver specimens of each group were fixed in 10% buffered neutral formalin for 24 h. The fixed specimens were routinely processed to obtain 4–5 μm thick paraffin sections for histological and immunohistochemical evaluation. Sections of each group were stained with Masson trichrome and hematoxylin and eosin (H&E) stain. Collagen 1 (1:200, ab5694, Abcam) and anti-a-SMA (1:200, 72026T, CST) were used for immunohistochemical staining. The samples were then observed and photographed under a microscope. For immunofluorescence staining, liver sections were stained with FITC fluorescent anti-a-SMA antibody (72026T, CST) and cy3 fluorescent anti-collagen 1 antibody (ab5694, Abcam). Nuclei were then stained with DAPI, and the liver sections were then observed and photographed using a fluorescence microscope.
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Immunofluorescence Localization of Endothelial and Fibroblast Markers

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The expression and the localization of different target proteins were observed using immunofluorescence methods. HUVECs and CFs were fixed with 4% paraformaldehyde, permeabilized and then blocked with 2% BSA. Thereafter, cells were incubated with primary antibodies against CD31 (Abcam, ab28364) and α‐SMA (Abcam, ab5694) in HUVECs, and α‐SMA (Abcam, ab5694) in CFs overnight at 4°C. After incubation with two different fluorescent secondary antibodies for 30 minutes at 37°C and staining with DAPI, cell slides were sealed using antifade mounting medium. Finally, images were obtained with immunofluorescence microscopy (Nikon).
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5

Immunofluorescence Staining of Vascular Smooth Muscle Cells

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Immunofluorescence staining was performed as described previously [38 (link),39 (link)]. Briefly, VSMCs were seeded in a 24-well plate with glass coverslips and subjected to different treatments. Next, VSMCs were fixed with 4% paraformaldehyde for 15 min and permeabilized for 30 min with 0.1% Triton X-100 in PBS. After washing with PBS three times, cells were blocked with 10% BSA and incubated overnight at 4 °C with Ki67 antibody (1:1000, 9449T, CST), γ-H2AX antibody (1:500, ab81299, Abcam), α-SMA antibody (1:500, ab5694, Abcam) and calponin antibody (1:500, ab5694, Abcam). Subsequently, VSMCs were washed and incubated with the fluorescent-labeled secondary antibodies (1:500, ab150116, ab150080, Abcam) for 1 h at room temperature in the dark. Finally, glass coverslips were mounted with 4′,6-diamidino-2-phenylindole (DAPI; Vector Laboratories, Inc.) to stain the nucleus. Six view fields from each coverslip were randomly captured with a fluorescent microscope.
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Isolation and Hypoxic Exposure of Rat PASMCs

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The isolation of rat PASMCs was in accordance with previously carried out studies.29 Rat PASMCs were isolated from male Wistar rats. The anaesthetic used was sodium pentobarbital at a dosage of 60 mg/kg. Subsequently, PASMCs were enzymatically isolated and transiently cultured in DMEM for 3 passages for stable cultivation in vitro. The isolated PASMC cells were identified by immunofluorescence using the antibody against α‐SMA protein antibody (#ab5694, Abcam). The experiment was performed on the third passage cells from the same batch of isolated PASMC. Exposure of cells to chronic hypoxia was performed by transferring them to an incubator gassed with 2.5% O2, 5% CO2 and 92.5% N2 for 24 hours before the study.
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7

Immunohistochemical Analysis of Corneal Cells

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Immunohistochemical staining was performed on experimental and control tissue sections as previously described (Singh et al., 2012 (link) and 2013 ). Briefly, sections from the central cornea were washed with PBS twice for five minutes each and permeabilized with 1% triton X-100 for one hour at room temperature. Sections were incubated with 4% normal goat serum with 1% BSA in PBS at room temperature for one hour to block non-specific binding. Sections were stained for α-smooth muscle actin with rabbit polyclonal antibody (ab5694, Abcam, San Francisco, CA) diluted 1:100 in 1% normal goat serum in PBS and/or for GFP with chicken polyclonal antibody (ab13970, Abcam) diluted 1:750 in 1% normal goat serum in PBS for 90 minutes. Sections were washed with PBS and then incubated with respective secondary antibodies (A11037 Invitrogen, Grand Island, NY) Alexa Fluor 594 goat anti-rabbit IgG, 1:200 dilution or A11039 (Invitrogen) Alexa Fluor 488 goat anti-chicken IgG, 1:1000 dilution, for 60 minutes before washing with PBS four times. Immunohistochemical controls were performed with omitted primary antibody. Coverslips were mounted with Vectashield containing DAPI (Vector Laboratories Inc., Burlingame, CA) to allow visualization of all nuclei in the tissue sections.
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8

Immunohistochemical Analysis of Tumor Microenvironment

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Mice were sacrificed on indicated days. Tumor tissues were completely dissected, fixed in 4% buffered paraformaldehyde, embedded in paraffin, and were subsequently cut into 5-µm-thick sections. The sections were dewaxed and then placed in citric acid buffer (PH 6.0) for microwave antigen retrieval. Endogenous peroxidase of sections was then blocked with 3% hydrogen peroxide solution. Sections were further blocked with 3% bovine serum albumin blocking solution (Sigma) and immunostained with rabbit anti-mouse PD-L1 (ab233482), rabbit anti-mouse α-smooth muscle actin (SMA) (ab5694), rabbit anti-FN1 (ab2413), rabbit anti-CDH1 (ab76319) and rabbit anti-Ki-67 (ab15580) purchased from Abcam, UK at 4 ℃ overnight. The sections were then washed well with phosphate buffered saline with Tween-20 (PBST) and incubated with goat anti-rabbit IgG secondary antibody (ab150077, abcam) at room temperature for 1 hours. After being washed with PBST, staining was developed with DiAminoBenzidine. Slides were counterstained with hematoxylin, dehydrated, and finally mounted. These sections were observed under a microscope and were measured by using Image-pro Plus 6.0 software.
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9

Protein Expression Analysis in Kidney and IMCD3 Cells

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Whole-cell protein was extracted from kidneys or IMCD3 cells using Radio immunoprecipitation assay (RIPA) buffer (Thermo Scientific, USA). An equal amount of proteins (20 µg) was loaded on a sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to a polyvinylidene fluoride (PVDF) membrane (Millipore, USA). The membrane was then blocked with 5% skim milk and incubated overnight at 4 °C with anti-DJ-1 (1:1,000, 2134S, CST, USA), anti-Ki67 (1:1,000, ab16667, Abcam, USA), anti-PCNA (1:2,000, ab18197, Abcam, USA), anti-Bax (1:500, 2772S, CST, USA), anti-Bcl-2 (1:500, ab196495, Abcam, USA), anti-α-Smooth muscle actin (SMA, 1:1,000, ab5694, Abcam, USA), anti-fibronectin (FN1, 1:1,000, ab2413, Abcam, USA), anti-TGF-β1 (1:1,000, ab92486, Abcam, USA), anti-p53 (1:5,000, ab26, Abcam, USA), anti-Cytc (1:5,000, ab133504, Abcam, USA), anti-cleaved-caspase 3 (1:1,000, ab2302, Abcam, USA), and anti-cleaved-caspase 9 (1:1,000, ab2324, Abcam, USA) antibodies. Subsequently, the goat-anti-mouse Horseradish Peroxidase (HRP)-conjugated IgG antibody (1:5,000, Cat. No. ab205718, Abcam, USA) was used as a secondary antibody. Finally, bands were developed with an Enhanced Chemiluminescence Kit (Thermo Scientific, USA) and quantified by Quantity One imaging software (BioRad, USA) normalized to β-actin (internal control).
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10

Liver Protein Expression Analysis

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Lysates were prepared by homogenizing liver pieces in 3 volumes of 0.25 M sucrose–10 mM phosphate buffer (pH 7.4), followed by centrifugation at 700 ×g for 10 min and collection of the supernatant. Western blotting was performed as described previously [8 (link)], using antibodies against alpha-smooth muscle actin (α-SMA) (ab5694, Abcam plc, Cambridge, UK) and platelet-derived growth factor receptor beta (PDGFR-β) (#3169, Cell Signaling Technology, Beverly, MA). Anti-glyceraldehyde-3-phosphate dehydrogenase (GAPDH) (sc-25778, Santa Cruz Biotechnology, Santa Cruz, CA, USA) was used for a loading control. Pierce 1-StepTM Ultra TMB-Blotting Solution (Pierce Biotechnology, Rockford, IL, USA) was used for signal development. Gray values for the target protein bands were measured with Image J (NIH, Maryland, USA) and normalized to the control group band value (defined as 1.0).
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