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Thermo ultimate 3000 hplc

Manufactured by Thermo Fisher Scientific
Sourced in United States, Germany

The Thermo Ultimate 3000 HPLC is a high-performance liquid chromatography system designed for analytical and preparative applications. It features a robust design, advanced auto-sampler, and a versatile, high-pressure solvent delivery system. The Ultimate 3000 HPLC provides precise control of flow rate, gradient, and temperature to enable effective separation and analysis of a wide range of chemical compounds.

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8 protocols using thermo ultimate 3000 hplc

1

UHPLC-MS/MS Analysis of TGS Phenolic Profile

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The TGS phenolic profile was assessed by UHPLC-MS/MS analysis (10 mg/mL solution in H2O:MeOH (50:50, v/v)) as described by Fernández-Fernández et al. [11 (link)]. The identification and quantification of phenolic compounds was carried out using a Thermo Ultimate™ 3000 HPLC (Thermo Scientific, Sunnyvale, CA, USA) coupled to a hybrid quadrupole-orbitrap mass spectrometer (Q-ExactiveTM; Thermo Scientific, Bremen, Germany) equipped with heated electrospray ionization (HESI-II). Chromatographic separation was performed as follows: UPLC BEH C18 column 2.1 mm × 100 mm, 1.7 μm particle size (Waters, Milford, MA, USA); mobile phase, water-acetonitrile gradient at a flow rate of 0.3 mL/min. Thermo Scientific™ Dionex™ Chromeleon™ 7.2 Chromatography Data System (CDS) software was used for data acquisition and processing. The peak area was used to define the relative concentration of the phenolic compounds.
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2

Quantitative Analysis of PFOA and PFBA

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The PFBA samples were analyzed at wavelength of 262 nm using ultraviolet−visible spectrophotometry (Unico, model 2008A). PFOA was analyzed directly via LC-MS/MS by two methods. First, The PFOA samples without SDS employed a Thermo Ultimate 3000 HPLC (Thermo Fisher Scientific, Breme, Germany) and AB-Sciex Qtrap 4500 mass spectrometer (AB Sciex Pte. Ltd., Singapore). A Waters column (C18, 2.1 × 50 mm, 1.7 μm) was maintained at 35 °C. The mobile phase of water and 100% acetonitrile applied in the ratio of 40:60 was set at a flow rate of 0.25 mL/min. Second, PFOA samples with SDS employed an Agilent HPLC 1260 and mass spectrometer 6150. An Agilent ZORBAX RRHD Eclipse Plus C18 column (2.1 × 50 mm, 1.8 μm) was maintained at 40 °C. The mobile phase of 0.01M ammonium acetate and 100% acetonitrile applied in the ratio of 60:40 was set at a flow rate of 0.3 mL/min. All the samples were passed through a 0.45 μm filter to remove suspended particulate impurities. Mass-labeled internal standard 13C4-PFOA was added to monitor recovery. The R2 of the calibration curves were >0.999 for each measurement. The quantifiable detection limit of the two systems is ~ 0.1 μg/L. These methods have been used successfully in our prior studies.26 (link),33 (link),34 (link)
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3

UHPLC-MS/MS Analysis of Citrus Pomace Phenolics

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Solutions of 10 mg/mL in H2O:MeOH (50:50, v/v) of Clemenule and Ortanique mandarin and Navel and Valencia orange pomaces were analyzed by UHPLC-MS/MS. The analysis of phenolic compounds was carried out according to the method described by Fernández-Fernández et al. [19 (link)]. Briefly, the identification and quantification of these compounds was performed using a Thermo Ultimate™ 3000 HPLC (Thermo Scientific, Sunnyvale, CA, USA) coupled to a hybrid quadrupole-orbitrap mass spectrometer (Q-ExactiveTM; Thermo Scientific, Bremen, Germany), equipped with heated electrospray ionization (HESI-II). Chromatographic separation was carried out using a UPLC BEH C18 column; 2.1 mm × 100 mm, 1.7 μm particle size (Waters, Milford, MA, USA) using water-acetonitrile gradient according to Barnaba et al. [40 (link)] at a flow rate of 0.3 mL/min. Data acquisition and processing were carried out with Thermo Scientific™ Dionex™ Chromeleon™ 7.2 Chromatography Data System (CDS) software. Qualitative and semi-quantitative analyses of the mass spectrometry data were performed using full SCAN approach. For the screening analysis, the accurate mass of both precursor and product ions and their isotope patterns were used. In absence of standards, the peak area was used as the parameter to define the relative concentration.
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4

BMAA and Isomers Quantification by HPLC-MS/MS

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Samples were analyzed using a Thermo Ultimate 3000 HPLC (Thermo Fisher Scientific, Bremen, Germany) in tandem with an AB Sciex Qtrap 4500 mass spectrometer (AB Sciex Pte. Ltd., Singapore) combined with an electrospray ionization source. The parameters of both the LC and MS systems were the same as those described in our previous study [8 (link)]. A SeQuant® ZIC-HILIC column (150 mm × 2.1 mm, 5 µm) was used to separate BMAA using a binary mobile phase. Solvent A was water containing 0.1% formic acid, and solvent B was acetonitrile containing 0.1% formic acid. The injection volume was 5 µL. The gradient was run at 350 μL·min−1 at 30 °C from 95% to 60% B over 19 min, decreased to 40% B at 25 min, increased to 95% B at 27.01 min, and held for 2.99 min before re-equilibration for the next run. Mass spectrometry parameters were set as follows: curtain gas pressure of 40 psi, spray voltage of 5500 V, source temperature of 350 °C, source gas 1 and 2 at a pressure of 55 psi and 50 psi, respectively, and collision cell entrance potential of 10 V. The selective reaction monitoring (SRM) mode with five transitions (m/z 119 ->102, 101, 88, 56, and 44) was used to quantify BMAA and its isomers (Table S1). The limits of detection of BMAA and DAB were 3.4 and 0.65 ng·mL−1, respectively.
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5

HPLC Analysis of Lipid Compounds

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Injections (100 µL) were made of each solvent extracted sample on a Thermo Ultimate 3000 HPLC (Thermo-Fisher, Sunnyvale, CA, USA) using an updated method, as previously reported [27 (link)]. The column was a 100 × 3 mm LiChrosorb 5 DIOL (Chrompack, Raritan, NJ, USA), using a 0.5 mL/min flow rate and the following binary gradient: A: 1000:1 hexane:acetic acid; B: 100:1 hexane:isopropyl alcohol with the following ramp: 0 min, 100/0 A/B; 8 min, 100/0; 10 min, 75/25; 40 min, 75/25; 41 min, 100/0 and 60 min, 100/0. Detection was accomplished by diode array detectors (DAD) at 205 nm and 320 nm, and also with the Thermo Charged Aerosol Detector (CAD). Oleic acid, linoleic acid, linolenic acid and the unknown potential free fatty acids (FFA), using linoleic calibration, were appraised at 205 nm and oryzanol at 320 nm. The 254 nm and 280 nm responses were also recorded by the DAD for monitoring, but were not used for any peak analyses. Detection was accomplished by CAD for the steryl esters (StE), triacylglycerols (TAG), stearic/palmitic acid, 1,3-diacylglycerols and 1,2-diacylglycerols (DAG), both using sterol calibration. There were multiple iterations of the various possible DAG compounds, and peaks were therefore broad sets that separated out as 1,2 versus 1,3. The instrument numbers generated were reliable for showing how the classes delivered trends through processing.
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6

HPLC Analysis of Bioactive Compounds

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The experiment was performed on a Thermo Ultimate 3000 HPLC system coupled with an Ultimate 3000 diode array detector (Thermo Fisher Scientific, USA). The chromatographic separation was performed on an Inertsil ODS-4 column (4.6 mm × 250 mm × 5 μm; GL-science Inc., Tokyo, Japan), using ultrapure water–0.1% formic acid solution (eluent A) and methanol (eluent B) as mobile phases at a flow rate of 0.8 mL min−1. The column temperature was maintained at 30 °C. Two mobile phases were programmed as follows: 0–5 min, 5–22% B; 5–20 min, 22% B; 20–35 min, 22–24% B; 35–45 min, 24–25% B; 45–50 min, 25–40% B; 50–60 min, 40–45% B. The injection volume was 10 μL. Chromeleon Chromatography Data System software 7.0 was used for instrument control, data acquisition, and data analysis. The chromatographic peaks of these nine compounds (GA, C, EC, EGC, ECG, EGCG, theobromine, theophylline, and caffeine) were confirmed by comparing their retention time and UV-Vis absorbance spectra with those of the authentic standards. Quantification of these compounds was conducted by the integration of the peak using the external standard method. Calibration curves of these nine compounds were obtained at a detection wavelength of 280 nm over different concentrations, of which the calibration curves were shown in Fig. S1 (ESI).
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7

HPLC Quantification of AMP and ATP

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The amounts of AMP and ATP were quantified using an HPLC method essentially as described previously.46 (link) Briefly, 2 × 106 cells were plated in 100-mm2 (link) dishes and treated with 4OHT for 24 h. Cells were harvested in 0.2 N perchloric acid and neutralized with KOH. Nucleotides in cell lysates were analyzed by Thermo Ultimate 3000 HPLC (Thermo Scientific, Wilmington, DE, USA) using an Inno C18 column (Innopia, 05AL 02015).
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8

Quantitative LC-MS Metabolomics Workflow

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Samples were injected in a constrained randomized order. A QC injection was done every 8th sample followed by a blank injection. Prior to the injection of samples, five repeated injections of the QC were done to precondition the column, followed by two blank injections. Following, a 2-fold serial dilution series ranging from 0.5 to 32.0 µL QC was injected. In addition, MS/MS analysis was performed on subpools of samples. The injection volume was 10 µL and a Thermo Accucore aQ RP C18 column (100 × 2.1 mm, 2.6 µm particle size, Thermo Fisher Scientific, Waltham, MA, USA) was used for the chromatography. The analysis was performed on a Thermo Ultimate 3000 HPLC and Thermo Q-Exactive Orbitrap mass spectrometer (Thermo Fisher Scientific). Details of the LC-HRMS analysis have been previously described [26 (link)].
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