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Bl21 de3 cells

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BL21(DE3) cells are a commonly used bacterial strain for the expression of recombinant proteins. These cells are derived from the E. coli B strain and contain the DE3 lysogen, which allows for the controlled expression of target genes under the T7 promoter system. BL21(DE3) cells are designed to provide high-level protein expression for a wide range of proteins.

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59 protocols using bl21 de3 cells

1

Plasmid Propagation and Recombinant Protein Expression

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Plasmid propagation was performed using DH5α competent E. coli cells plated on Luria Broth (LB) agar (37°C) or inoculated in LB liquid media (37°C, 200 RPM); both grown overnight in the presence of a selective antibiotic. Recombinant MscL and associated mutants were produced in E. coli BL21(DE3) cells (Thermo Fisher), cultured in LB Broth supplemented with kanamycin (50 μg mL−1) for 4 hrs (25°C, 200 RPM) following IPTG induction (final concentration 1 mM) at an OD600 ∼0.8.
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2

Recombinant Tau Protein Purification

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All recombinant truncated and full-length tau proteins (other than those used in Additional file 1: Figure S1) were produced in E.coli and purified as described previously [72 (link)] with minor modification. Briefly, cDNA encoding tau sequences were subcloned into the pET15b vector (Novagen) and transformed into BL21 (DE3) cells (ThermoFisher). Following induction of protein expression, cell pellets were resuspended in 50 mM PIPES pH 6.4, 1 mM EGTA, 1 mM DTT and protease inhibitors. Cells were disrupted through sonication and the clarified lysate was then boiled for 15 min to allow enrichment of soluble and un-precipitated tau protein in the supernatant. Further purification was performed by ammonium sulfate precipitation, Cellufine™ phosphate (JNC Corporation) ion exchange chromatography and reverse-phase HPLC.
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3

Culturing HEK 293 and Bacterial Cells

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Human embryonic kidney (HEK) 293 cells (female) were a gift from Brent Stockwell’s Lab and were not further authenticated. HEK 293 were cultured in Dulbecco’s Modified Eagle Medium (DMEM) supplemented with 10% Fetal Bovine Serum (FBS) and 1% penicillin/streptomycin at 37 °C with 5% CO2. HEK 293 cells were tested every 4 months for mycoplasmal infection. Chemically competent C43(DE3) cells and Electrocompetent MC1061 cells were purchased from Lucigen (LCG Biosearch Technologies) and grown in LB medium. BL21(DE3) cells were purchased from ThermoFisher Scientific and grown in LB medium.
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4

Expression and Purification of DTN Proteins

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dtn-1 and dtn-2 cDNAs were cloned into pMAL-c5X (New England Biolabs) for expression with an N-terminal MBP tag. Constructs were expressed in BL21 (DE3) cells (Thermo Fisher Scientific) and induced with 0.4 mM IPTG for 16 hr at 15°C. Cell disruption was achieved by sonication in extraction buffer (50 mM Tris-HCl (pH 7.5), 150 mM NaCl, 0.1% Triton X-100, and 1 mM β-mercaptoethanol), and cellular debris was removed by centrifugation at 40,000 × g. Fusion proteins were purified through amylose beads (NEB).
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5

Engineered Protein Expression and Purification

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Mammalian expression plasmid of HSA was obtained from Addgene. An E400R point mutation was introduced to the HSA sequence by the Q5 site-directed mutagenesis kit using the primer HSA-F and HSA-R. After sequence verification by Sanger Sequencing, plasmids bearing wild type HSA and the mutant were transfected to HeLa cells using Lipofectamine 3000 transfection kit (Invitrogen) and Opti-MEM (Gibco) according to the manufacturer's protocol. The cells were cultured overnight before the change of medium to DMEM without FBS supplements to remove BSA. After a 48 h culture at 37°C, 5% CO2, the media expressing HSA were collected and stored at −20°C. The media were analyzed by SDS-PAGE and Western Blotting to confirm protein expression. The PDZ domain (in the pGEX6p-1 vector) was obtained from the General Biosystems. A double point mutant of PDZ (i.e., R46E: K48D) was introduced by the Q5 Site-directed mutagenesis kit using specific primers of PDZ-F and PDZ-R. After verification by Sanger Sequencing, the mutant vector was transformed into BL21(DE3) cells (Thermo Scientific) for expression. The GST fusion PDZ mutant protein was purified by GSH resin as previously described.
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6

BL21(DE3) Bacterial Expression

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BL21(DE3) cells were obtained from ThermoFisher Scientific. Cells were cultured in LB Broth at 37°C with agitation or as required for recombinant protein production.
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7

Expression and Purification of Tagged α-Synuclein

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pET21a-α-synuclein, encoding human α-synuclein, was a gift of the Michael J. Fox Foundation (Addgene plasmid #51486). The pRK172-mouse α-synuclein-GFP plasmid was a kind gift of Dr. Virginia Lee (University of Pennsylvania) [10 (link)]. The tobacco etch virus protease (TEV) site (ENLYFQG) was inserted following the 6x His tag, in frame with the start of the GFP sequence. A forward primer (5’-TAT TTT CAG GGC ATG GTG AGC AAG GGC GAG-3’) and reverse primer (5’- AAG ATT CTC GAG ATG GTG ATG GTG ATG G-3’) were combined using the Q5 site-directed mutagenesis protocol (New England Biolabs, Ipswitch, MA). The resulting plasmid, pRK172-α-syn-TEV-GFP, was sequenced and transformed into competent BL21(DE3) cells (Thermo Fisher Scientific, Waltham, MA, Cat# EC0114) for protein production.
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8

Purification of recombinant human KAT II

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The expression plasmid (Genscript, Piscataway, NJ, USA) containing human KAT II (hKAT II) as C-terminal intein (chitin binding domain) fusion, in pTXB1 vector, was transformed into BL21 (DE3) cells (Thermo Fisher Scientific). Cells were grown in 2YT media (Thermo Fisher Scientific) at 37°C until the optical density reached 0.6 (measured at 600 nm), and induced with 300 μM isopropyl 2-D-1-thiogalactopyranoside for 18-20 h at 18°C. The cells were then harvested by centrifugation (2,700 x g, 20 min), and the pellet was re-suspended in chitin column buffer, pH 8.5, containing 20 mM Tris, 500 mM NaCl and 1 mM EDTA in 10% glycerol and 5 mM 2-mercaptoethanol. hKAT II was purified by affinity chromatography using a chitin column (New England Biolabs, Ipswich, MA, USA). Intein was cleaved on the column by washing with the chitin column buffer containing 50 mM dithiothreitol. This was followed by ion exchange chromatography using a DEAE column (GE Healthcare Life Sciences, Marlborough, MA, USA). Pure hKAT II was obtained after a final round of purification by size exclusion chromatography, using a S200 column (GE Healthcare Life Sciences). Protein (in 20 mM Tris, 50 mM NaCl and 40 μM pyridoxal-5′-phosphate, pH 8.5) was concentrated to 10.2 mg/ml, flash-frozen in liquid nitrogen and stored at −80°C.
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9

His-Fc-G67 Polypeptide Production

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His-Fc-G67 polypeptide was prepared by our previous methods with some modifications [36 (link)]. Fc-G67 contains the amino acid sequence derived from C1 region of Protein G, which strongly binds to IgG Fc region. A DNA fragment encoding the forward linker, C1 region, and the backward linker cysteine was synthesized by FASMAC Co., Ltd. (Kanagawa, Japan) and was then cloned into pET302/NT-His (Thermo Fisher Scientific, Waltham, MA, USA). The recombinant proteins were produced in BL21(DE3) cells (Thermo Fisher Scientific) using MagicMediaTM E coli expression medium (Thermo Fisher Scientific) and were purified with TALON Metal Affinity Resin (Takara Bio Inc., Shiga, Japan).
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10

Purification of GST and His6-SUMO Fusion Proteins

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GST fusion proteins were expressed in BL21(DE3) cells (Thermo-Fisher) and purified from bacterial lysates in STE buffer, using glutathione sepharose beads. Proteins were left on the beads and after several washing steps used for pulldown assays. His 6 -SUMO-tagged fusion proteins were expressed in BL21(DE3) cells and purified from bacterial lysates prepared in native lysis buffer (50 mM NaH 2 PO 4 , 500 mM NaCl, pH 8.0) using Ni-NTA agarose (Qiagen, Hilden, Germany). Proteins were eluted from beads with 250 mM imidazole in lysis buffer and immediately applied to G-25 columns (GE Healthcare), followed by elution in 0.5 M NaCl, 20 mM Tris/HCl pH 7.5 (for Zn 2+ aggregation assays) or 150 mM NaCl, 50 mM Tris-HCl; pH 8.0 (for cleavage with SUMO protease). For protease cleavage, 1 mM DTT and 50 μl SUMO protease (Thermo-Fisher) were added to a total of 10 ml solution with a protein concentration of about 1 mg/ml. After digestion at 4 °C overnight, the His 6 -tagged SUMO part of the fusion protein, as well as His 6 -tagged SUMO protease, were removed by a second incubation with Ni-NTA agarose. Efficiency of all protein purifications was verified by SDS-PAGE, followed by Coomassie staining. Protein concentrations were determined by Bradford assay, using BSA as a standard.
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