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Epics xl

Manufactured by Beckman Coulter
Sourced in United States, Germany, France, United Kingdom, China, Japan, Spain

The Epics XL is a flow cytometry instrument manufactured by Beckman Coulter. It is designed to analyze and sort cells in a liquid sample. The Epics XL uses laser technology to detect and measure the physical and fluorescent properties of individual cells or particles as they pass through a flow cell.

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474 protocols using epics xl

1

Analyzing Cell Cycle in NKX2-5-GFP hESCs

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Differentiated NKX2–5-GFP hESCs at different time points were dissociated with Accutase (Innovative Cell Technologies, San Diego, CA, USA) for 30 min, and passed through a 30 μm pre-separation filter (Miltenyi Biotec Inc., Auburn, CA, USA) to produce a single cell suspension. The cells were analyzed on EPICS XL (Beckman Coulter, Miami, FL, USA) with Expo32 ADC XL 4 Color software. Data analysis was performed using FlowJo Software (Version X; TreeStar, Ashland, OR, USA). Cell sorting was performed using Fluorescence Activated Cell Sorting (FACS) on EPICS XL (Beckman Coulter).
NKX2–5-GFP ES cells were treated with MG-132 at specific concentrations (25 μM) and with UA (7.5 mg/dl) for 48 h. The collected cells were then fixed using cold 70% ethanol at −20 °C over 24 h, washed with PBS and incubated with 50 μg/mL propidium iodide (Becton, Dickinson and Company, Franklin lake, NJ, USA) at room temperature for 15 min. After being supplemented with propidium iodide, cycle cell analysis was performed using EPICS XL (Beckman Coulter). Percentage of cells at each cell cycle phases was determined with Modfit LT Software.
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2

Cardiomyocyte Characterization and Multinuclear Analysis

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Both WT and KO cardiomyocytes were dissociated into single cells using CardioEasy CM dissociation buffer (Cellapy), and fixed with chilled fixation buffer (BD Biosciences) for 10–15 min at 25°C. Fixed cardiomyocytes were incubated with anti-cardiac troponin T antibody (cTnT) and then Alexa Fluor 488 secondary antibodies for 30 min, respectively. Cardiomyocytes were then washed with PBS three times and analyzed using FACS analysis equipment (EPICS XL, Beckman). Data were analyzed with FlowJo X software.
For multinuclear detection experiments, the cells were fixed with chilled 70% ethanol at −20°C for 24 h, washed with PBS one time, stained with 50 μg/mL propidium iodide (Becton, Dickinson and Company, Franklin lake, NJ, United States) at room temperature for 15–20 min and analyzed using EPICS XL (Beckman Coulter). Data were analyzed with Modfit LT Software.
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3

Rhodamine 123 Flow Cytometry Analysis

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Cells were washed with PBS and incubated with 1 µM rhodamine 123 (Rh123) in the dark for 30 min at 37°C. The mean fluorescence intensity (MFI) of Rh123-labeled cells was analyzed with System II software version 3.0 (Epics XL; Beckman Coulter, Inc.) using a flow cytometer (Epics XL; Beckman Coulter, Inc.) at an excitation and emission wavelength of 488 and 525 nm, respectively. A minimum of 1×104 events/sample were acquired.
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4

Apoptosis Analysis of Ca9-22 Cells

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After Ca9-22 cells were treated as above, the cells were collected, washed in PBS and treated with propidium iodide (PI). DNA contents were analyzed using an EPICS XL (Beckman Coulter). For Annexin V/PI staining, the treated cells were washed once with PBS and treated with the Annexin-V-FLUOS Staining kit (Roche Applied Science, Indianapolis, IN, USA) as previously described [7 (link), 13 (link)]. After incubation, treated cells were analyzed using an EPICS XL (Beckman Coulter), and apoptotic cell death was detected using the florescent nuclear dye Hoechst 33258 (Dojindo Laboratories Co.) and fluorescence microscopy.
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5

Cell Cycle and Apoptosis Analysis

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Cultured U2OS cells that had been subjected to 24 h treatment (section 2.3) were fixed overnight in 70% ethanol at 4 °C. After detachment and centrifugation, cells were stained with 0.1 μg/mL RNase A (Beyotime) for 30 min at 37 °C and subsequently with 50 μg/mL propidium iodide (PI, Beyotime) for 30 min at 4 °C. Next, the cells were assayed by flow cytometry (EPICS XL, Beckman Coulter, Brea, CA) at λex = 488 nm and emission in the FL3 channel. Each histogram was constructed on the basis of at least 5,000 events. Data were analyzed for cell cycle phases by calculating the percentage of cells in each phase using multicycle DNA cell cycle analysis software (FACScan, BD Biosciences).
Apoptosis was determined with an annexin V-FITC apoptosis detection kit (Beyotime) according to the manufacturer’s instructions. Briefly, U2OS cells were seeded into 6-well plates for 24 h and treated with the indicated chemical reagents for 24 h. After incubation the cells were collected, washed with PBS, resuspended in annexin V binding buffer, and incubated with annexin V-FITC/PI in the dark for 15 min. The cells were assayed by flow cytometry (EPICS XL, Beckman Coulter) at λex = 488 nm and emission in the FL1 (FITC) and FL3 (PI) channels. The extent of apoptosis (propidium iodidepositive and annexin V-positive cells) was analyzed with FACS software (Beckman).
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6

Phenotypic Characterization of Activated T Cells

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Non-adherent lymphocytes or purified CD4+ T cells were collected at 0, 1, 2 and 3 days following stimulation, and the cells were stained with phycoerythrin (PE)-conjugated anti-CD83, fluorescein isothiocyanate (FITC)-conjugated anti-CD4 or FITC-conjugated anti-CD25 (All from BioLegend, San Diego, CA, USA) and incubated on ice for 30 min in the dark. The controls were prepared using FITC- or PE-conjugated isotype controls. The intracellular staining of TGF-β-treated CD4+ T cells with anti-Foxp3 mAb was performed using an anti-human Foxp3 staining set (eBioscience, San Diego, CA, USA) according to the manufacturer's instructions. The cells were subsequently analyzed using a flow cytometer (Beckman Coulter Epics XL; Beckman Coulter, Miami, FL, USA) by using a two-color acquisition method and the data were analyzed by using FlowJo 7.6.1 software (Treestar, Inc., Ashland, OR, USA).
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7

Fluorescence-based Cell Binding Assay

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Cells were cultured at a density of 5.0×105 cells/ml, collected by centrifugation and resuspended in 0.5 ml of phosphate-buffered saline (PBS). In order to investigate the ability of AAFP to bind to cancer cells, cells were incubated with FAM-TLS11a, AAFP or AAFP-mis (250 nM) at 4̊C in the dark for 30 min in 0.5 ml of binding buffer [PBS supplemented with 5 mM MgCl2, 4.5 g/l glucose and 1 mg/ml bovine serum albumin (BSA)]. Then cells were washed with PBS, suspended in 0.5 ml of binding buffer and analyzed. Fluorescent cells were detected using flow cytometry (Beckman Coulter Epics XL; Beckman Coulter, Inc., Brea, CA, USA), and data were analyzed using FlowJo Software 7.6.2 (FlowJo LLC, Ashland, OR, USA).
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8

Evaluating Aβ-Induced Cytotoxicity in MSCs

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Cell viability was evaluated by the MTT assay. Briefly, after treatment with Aβ25−35, MSCs were seeded in 96-well plates and exposed to 10 μl MTT (5.0 g/l, Sigma-Aldrich; Merck KGaA, Darmstadt, Germany) and incubated for 4 h at 37°C. Then, the medium was discarded, and 100 μl DMSO was added into each well. The formazan crystalline product was dissolved, and the optical density was measured at 570 nm with a microplate reader. Cell viability was expressed as a percentage of the value against the non-treated control group.
Apoptosis of MSCs was quantified using the Annexin V-FITC Apoptosis Detection Kit (KeyGEN BioTECH), according to the manufacturer's protocol. After exposure to Aβ25−35, MSCs were washed with PBS, resuspended in 100 μl annexin V-FITC labeling solution, and stained with 5 μl annexin V-FITC and 5 μl propidium iodide (PI) for 30 min in dark at room temperature. Subsequently, samples were analyzed using flow cytometer (Beckman Coulter EPICS~XL, Beckman Coulter, Inc., CA, USA).
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9

Cell Cycle Analysis of Cancer Cells

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A total of 5,637 cells (3×106 cells/culture flask) was treated with Ad5-UPII-E1A alone or combined with different concentrations of MMC (0.05, 0.1 and 0.2 mg/ml) or HCPT (0.1, 0.2 and 0.4 mg/ml) for 48, 72 and 96 h at 37°C and was harvested using trypsin. The cells were washed with PBS and then kept overnight at 4°C in 70% ethanol. The cells were then collected and resuspended in PBS, propidium iodide (PI; 50 mg/ml; Sigma-Aldrich; Merck KGaA) and RNase A (100 mg/ml; Thermo Fisher Scientific, Inc.), and incubated at 37°C for 30 min. Cell cycle distribution was evaluated by flow cytometry (Beckman Coulter Epics XL; Beckman Coulter, Inc., Brea, CA, USA), and data were analyzed by CytExpert software (edition 1.0.135.1; Beckman Coulter, Inc., Brea, CA, USA).
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10

U2OS Cell Apoptosis and Cell Cycle Assay

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A total of 4x10 6 U2OS cells were treated with 0, 25 or 35 µM VK4 in the presence or absence of the pan-caspase inhibitor carbobenzoxy-valyl-alanyl-aspartyl-(O-methyl) -fluoromethylketone (Z-VAD-FMK; 50 µM). Following treatment, cells were harvested, washed with PBS, and resuspended in 200 µl binding buffer containing 5 µl annexin V before they were incubated in the dark for 10 min at room temperature, according to the manufacturer's instructions (Beyotime Institute of Biotechnology). Cells were subsequently labeled with 10 µl PI and the samples were immediately analyzed by the Multicycle AV software using the Beckman Coulter Epics XL Flow Cytometer (Beckman Coulter, Inc., Brea, CA, USA).
Cell cycle analysis. Cell cycle analysis was performed as described previously (10) . Briefly, 4x10 6 U2OS cells were treated with 0, 25 or 35 µM VK4 for 24 h. The cells were then washed with PBS and fixed with 70% ice cold ethanol at 4˚C overnight. After washing twice with PBS, cells were stained with a PBS solution containing 50 µg/ml of PI and 100 µg/ml RNase A for 30 min in the dark at room temperature. The stained cells were analyzed for cell cycle phase distribution using Beckman Coulter Epics XL (Beckman Coulter, Inc.).
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