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30 protocols using rat igg2a isotype control clone 2a3

1

Depleting Immune Cells and Neutralizing Cytokines in Mice

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To deplete immune cells and neutralize cytokines, mice were injected intraperitoneally with each antibody as previously described [57 (link)] with some modifications. To deplete neutrophils during early infection, mice infected with M. intracellulare were intraperitoneally injected with an initial dose of 400 μg followed by 300 μg of anti-Ly6G antibody (clone 1A8, BioXcell) or an initial dose of 400 μg followed by 300 μg of rat IgG2a isotype control (clone 2A3, BioXcell) every other day from 1 to 11 days postinfection (Fig 5A). To deplete neutrophils during chronic infection, mice infected with M. intracellulare were intraperitoneally injected with an initial dose of 400 μg followed by 300 μg of anti-Ly6G antibody (clone 1A8, BioXcell) or an initial dose of 400 μg followed by 300 μg of rat IgG2a isotype control (clone 2A3, BioXcell) 3 times per week for 2 weeks from 32 to 34 weeks postinfection (Fig 5I). To neutralize IL-17A, mice infected with M. intracellulare were intraperitoneally injected with 100 μg of anti-IL-17A antibody (clone 17F3, BioXcell) or 100 μg of mouse IgG1 isotype control (clone MOPC-21, BioXcell) every other day from 1 to 11 days postinfection.
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2

Tumor Immunotherapy in Murine Models

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For studies with MC38 tumors, wild type C57BL/6 mice were implanted with MC38 cells as described above. When tumor volume reached an average of 75 mm3, mice were randomized into groups of n = 15 mice. For studies with E0771 tumors, Ptpn6fl/fl mice were implanted as described above. For anti-PD1 studies: mice were dosed intraperitoneally (IP) with anti-PD1 (clone RMP1-14, BioXCell) or rat IgG2a isotype control (clone 2A3, BioXCell) at 10 mg/kg twice weekly (BIW). For anti-CD47 studies, mice were dosed IP with anti-CD47 (clone miap301, BioXCell) or rat IgG2a isotype control (clone 2A3, BioXCell) at 20 mg/kg BIW for 2 weeks as described in Liu et al. (41 (link)).
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3

In vivo Depletion of Myeloid Cells

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To deplete PMNs in vivo, anti-Ly6G (clone 1A8; #BP0075-1), anti-rat kappa immunoglobulin light chain (clone MAR 18.5; #BE0122), and isotype control rat IgG2a (clone 2A3; # BP0089) purchased from Bio X Cell were injected intraperitoneally 2 h prior infection of the animals in doses according to the mice’s body weight of 1 µg/g of anti-Ly6G and 2 µg/g of anti-rat Kappa immunoglobulin light chain or 1 µg/g of the isotype control. For the depletion of monocytes, mice were injected with 20 µg/mouse of rat anti-mouse CCR2 (clone MC-21, gifted by Matthias Mack) or corresponding isotype control IgG2b (clone RTK4530; #400666, BioLegend) intraperitoneally immediately at the time of infection.
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4

Evaluating Subcutaneous and Lung Tumor Growth in Mice

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All B16-derived cell lines were washed twice in PBS, filtered using a 70 μM nylon filter to remove cell aggregates. To evaluate subcutaneous tumor growth, 1 × 105 cells were inoculated subcutaneously in the flank. Tumor growth was monitored every 2–3 d until the maximal diameter of 2 cm. Tumor volume was calculated using the modified ellipsoidal formula: ½(length × width2). To evaluate tumor formation in the lung, each mouse received 2 × 105 cells in 100 μL PBS via the tail vein. All injected mice were euthanized 17–20 d later. Lung tissues were excised, photographed and the tumor nodules counted. To deplete CD8+ T cells, anti-CD8+ (clone 53-6.72) or isotype control (Rat IgG2a, clone 2A3) monoclonal antibodies purchased from BioXCell (West Lebanon, NH, USA) was administered via intra-peritoneal route (25 μg/mouse). Depletion of CD8+ T cells was confirmed 24 h later by flow cytometry. Antibody-treated mice were inoculated with B16-5 cells subcutaneously or intravenously. For immunization, B16 cells were irradiated, washed, suspended in PBS and 2 × 105 cells in 40 μL volume were injected via intradermal route on the left flank of anesthetized, 6–8-weeks-old C57BL/6 mice. Immunized mice were challenged 4–5 weeks later with 1 × 105 parental B16 cells, inoculated subcutaneously on the right flank or 2 × 105 cells intravenously. Tumor growth was monitored as described above.
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5

Anti-CSF1R Antibody Administration in Mice

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Mice were administered intraperitoneally with anti-CFS1R Ab (clone AFS98) or Rat IgG2a Isotype control (clone 2A3) from Bio X Cell (West Lebanon, NH, USA) (400 μg/mouse) every other day, and mice were analyzed 1 d after final treatment.
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6

Adenocarcinoma Tumor Model: Depletion and Checkpoint Blockade

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To establish the adenocarcinoma tumor models C57BL/6 WT female mice at 8–10 weeks of age, were intravenously injected with 7 × 104 KP cells or with 2 × 105 KP OVA variants (WT or KOCXCL5, KOCXCL5 (lenti-CXCL5) or KOCXCL5 (lenti-vec)). In one experiment (supplementary Figure 5) mice were challenged with 5 × 104 cells. Otherwise indicated, mice were sacrificed at initial (9 days) or at established stage of tumorigenesis (18 d). To deplete neutrophils in vivo, KP OVA bearing mice were intraperitoneally treated every 3 d, starting from the 6th to 12th d, with 200 µg of anti-Ly6G antibody (InVivo Plus, clone 1A8, Bio X Cell) or isotype control (Rat IgG2a isotype control, clone 2A3, Bio X Cell) and sacrificed at d 13.
In PD-L1 blockade experiments, mice were challenged with KP OVA WT or KOCXCL5 cells, intraperitoneally treated every 3 d with 200 µg of αPD-L1 (InVivoMab, clone 10 F.9G2, BioXcell) or isotype control (InVivoMab, rat IgG2b isotype control, clone LTF-2, BioXcell). Mice were sacrificed at d 18.
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7

Synthesis and Characterization of TLR-9 Agonist ODN1826

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The purified phosphorothioated TLR-9 agonist ODN1826 (5′-TCCATGACGTTCCTGACGTT-3′), which contains CpG motifs (CpG-ODNs), was synthesized by TriLink Biotechnologies (San Diego, CA, USA). Susceptibility to DNase digestion was diminished by phosphorothioate modification, prolonging the in vivo half-life of the agonist. Rat anti-mouse PD-1 (clone RMP1-14), hamster anti-mouse PD-1 (clone J43), rat IgG2a isotype control (clone 2A3) and rat anti-mouse CD16/32 (clone 2.4G2) antibodies were purchased from BioXCell (West Lebanon, NH, USA). A rat anti-mouse PD-1 (clone RMP1-14) Fc Silent™ antibody was purchased from Absolute Antibody (Redcar, Cleveland, UK). Liposomal clodronate was purchased from ClodronateLiposomes.com (Amsterdam, The Netherlands). An anti-mouse PD-1 F(ab)2 (clone RMP1-14, BioXCell, West Lebanon, NH, USA) antibody was generated as previously described [26 (link)]. 51Cr (1 mCi) was purchased from PerkinElmer (Waltham, MA, USA).
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8

Anti-Neutrophil Targeting in Melanoma

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SK-MEL-28 cells (2×106) were injected (two tumor sites per mouse) into the flanks of thirty 5- to 6-week old male BALB/c Foxn1nu mice (n = 5 mice and n = 10 tumors/group). When tumors had reached >50 mm3, ten mice were given i.p. injections of rat anti-neutrophil targeting antibody mLy-6G (100 µg in PBS; clone 1A8, Cat. # BE0075-1) or rat IgG2a isotype control (clone 2A3, Cat. # BE0089) from BioXCell (West Lebanon, NH). The antibodies were injected on days −2, 0, and 2, relative to initiation of vehicle or EBC-46 (25 nmol, 15 µg) treatment on day 0. An additional ten control mice received no antibody. The tumors on a total of 15 mice (5 each of no antibody, IgG2a isotype control or anti-mLy-6G antibody) were treated with 25 nmol EBC-46 per site (15 µg in 20% propylene glycol in water at 300 µg/ml, 50 µl injection), while the tumors on the remaining 15 mice were treated with 50 µl 20% propylene glycol in water only. Blood was taken from tail tips on Days −2, 0 and 2, and then twice weekly, smeared, and air dried on glass slides before being stained with Quick Dip (Fronine Laboratory Supplies, Rivertone, NSW, Australia). Tumor size was measured with calipers twice weekly. Mice were euthanized when the cumulative tumor burden per mouse exceeded 1,000 mm3 or at the end of the experiment.
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9

Anti-IL-17A Modulates Gut Immunity

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Four-week-old CBA/J mice were treated with 200 µg rat anti-mouse IL-17A monoclonal antibody (MAb) (clone M210; Amgen) or rat IgG2a isotype control (clone 2A3; BioXcell) at 3 days before and on the day of BMDC transfer (500,000 intraperitoneally from mice receiving SFB gavage or those not receiving SFB gavage). Mice were challenged intracecally with 2 × 106 trophozoites 7 days after BMDC transfer.
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10

Colon Carcinoma Cell Lines and Immunological Depletion

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Exponentially growing C51 and CT26 mouse colon carcinoma cell lines (kindly provided by Philogen S.p.A.) syngeneic to the Balb/c mice were cultured in Dulbecco's Modified Eagle Medium (DMEM) and Roswell Park Memorial Institute (RPMI) (Lonza), respectively, supplemented with 10% fetal calf serum (FCS) in a humidified 5% CO2 chamber at 37°C.
The L19-IL2 immunocytokine (Philogen S.p.A.) was diluted with sterile phosphate buffered saline (PBS, Lonza) to concentrations of 200 µg/ml. For in vivo depletion experiments, the monoclonal antibodies anti-CD8a (clone YTS 169.4), anti-CD4 (clone YTS 191) and the isotype control anti-KLH rat IgG2b (clone LTF-2) (BioXCell) were diluted with sterile PBS to a concentration of 1.67 mg/ml. For in vivo blocking experiments, the monoclonal anti-CD127 (clone A7R34) and rat IgG2a isotype control (clone 2A3) antibodies (BioXCell) were diluted with sterile PBS to a concentration of 2 mg/ml. All studies were conducted in a laboratory that operates under exploratory research principles using established laboratory protocols and general research investigative assays.
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