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398 protocols using versene

1

Episomal Reprogramming of Human iPSCs

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The human iPSC lines used in this study were first generated from a healthy male patient, WTC1145 (link),46 (link) using the episomal reprogramming method.47 (link) Informed consent was obtained for this procedure. iPSCs were maintained on Matrigel (Corning) in mTeSR Plus media (StemCell Technologies), which was exchanged every other day. For passaging, at ~70% confluency, iPSCs were passaged using Versene (Gibco) and replated in mTeSR Plus + 10 μM Y-27632, a Rho-associated kinase (ROCK) inhibitor (StemCell Technologies), to promote cell survival, and media was changed the next day to mTeSR Plus. For harvesting, iPSCs at ~70% confluency were washed once with 1x PBS with no Mg2+ or Ca2+(DPBS, Thermo Fisher Scientific), passaged with Versene, washed two times with 1x DPBS, pelleted, and frozen at −80°C. To ensure equal numbers of cells during cell pelleting, cells were counted using NucleoCounter NC-200 and Via-1 Cassettes (Chemometec). During harvesting, an aliquot of iPSCs was taken to verify pluripotency status of iPSCs. The presence of pluripotency markers Oct3/4 and SSEA-4 were validated using flow cytometry. Each cell pellet contained approximately 10 million harvested cells and was frozen at −80°C.
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2

Maintaining Human Pluripotent Stem Cells

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In the present study, pluripotent H9 hESC (WA09, WiCell Research Institute, Madison, WI, USA) and hiPSC (IMR90 clone #4, WiCell) were used. All work with H9 was reviewed and approved by the Stem Cell Oversight Committee, University of Wisconsin.
H9 and IMR90 cells were maintained in the presence of 5% CO2 at 37°C on 6-well tissue culture plates (Greiner Bio-One Cellstar, Monroe, NC, USA) coated with matrigel (WiCell) in mTeSR1 media (Stem Cell Technologies). The culture medium was changed daily, and cells were passaged with versene (Fisher Scientific, Hampton, NH, USA) every 4 to 6 days.
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Culturing Healthy and Sickle Cell hiPSCs

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Human induced pluripotent stem cells from a healthy individual (WT-hiPSCs) were purchased from ThermoFisher Scientific (cat # A18945). Sickle cell anemia donor SCA-hiPSCs (cat # WB66718) were obtained from the Wisconsin International Stem Cell Bank (WISCB). HiPSCs were cultured under feeder-free conditions in dishes coated with Geltrex (Fisher Scientific, cat # A1413302). HiPSCs were negative for mycoplasma, passaged using Versene (Fisher Scientific, cat # 15040066), cultured in StemFlex Medium (Fisher Scientific, cat # A3349401) and incubated at 37°C and 5% CO2.
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Isolation of Primary Mouse Epidermal Cells

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Primary mouse epidermal cells were isolated from neonatal C3H backskin, as previously described (Li et al., 2017 ). In brief, mouse backskin was incubated at 4°C overnight in a 1:1 mixture of 1X PBS and Dispase II (STEMCELL Technologies, Vancouver, Canada). The epidermis was then peeled off of the dermis with forceps and incubated at room temperature in a 1:1 mixture of 0.25% Trypsin-EDTA (ThermoFisher Scientific, Waltham, MA) and Versene (Fisher Scientific, Hampton, NH) for 3 min. Cells were then resuspended in fresh media, filtered, cultured in E low calcium media (ThermoFisher Scientific, Waltham, MA) (Nowak and Fuchs, 2009 (link)) at 37°C and 5% CO2, and plated on coverslips coated with 100 μM laminin (Sigma-Aldrich, St. Louis, MO).
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Maintenance of WTC-11 GCaMP6f hiPSCs

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The WTC-11 GCaMP6f hiPSC line was used in all experiments (Dr. Bruce Conklin, The Gladstone Institutes, San Francisco, CA, USA). hiPSCs were maintained on 10 cm2 dishes coated with 5 μg/mL vitronectin (Thermo Fisher, Waltham, MA, USA) in a cell culture incubator (37 °C, 5% CO2). hiPSCs were maintained in Essential 8 (E8) medium (Gibco, Waltham, MA, USA) and passaged every 4–5 days at 80% confluency with versene (0.5 M EDTA (Fisher, Waltham, MA, USA) and 1.1 mM D-glucose (MilliporeSigma, Cleveland, OH, USA) in DPBS without calcium and magnesium (Gibco)) onto new vitronectin-coated plates.
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Maintenance and Characterization of Pluripotent Stem Cells

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hPSCs were maintained as previously described (Hollmann et al. 2017 (link); Neal et al. 2019 ). CC3 iPSCs (Kumar et al. 2014 ), CD10 iPSCs (Tidball et al. 2016 (link)), and CDH5-2A-eGFP knock-in reporter H9 hESCs (Bao et al. 2017 (link)) were acquired from their original laboratories and maintained in E8 medium (Chen et al. 2011 (link)), prepared as previously detailed (Hollmann et al. 2017 (link)). hPSCs were cultured on tissue culture plates coated with growth-factor reduced Matrigel (Corning #354230). hPSCs were passaged with Versene (Fisher Scientific #15-040-066) upon reaching 60-80% confluency. All hPSCs utilized in this study were from cryopreserved stocks previously determined to be karyotypically normal, and hPSCs were not used for experiments after passage 40. None of the cell lines used in this study are listed as commonly misidentified cell lines by the International Cell Line Authentication Committee (ICLAC).
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7

CK2α Binding and Live/Dead Analysis

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Cells were lifted from adherent monolayer culture with Versene (Fisher Scientific, 15-040-066) at 37 °C, harvested by centrifugation (500 rcf), and resuspended in PBS with 10 mM MgCl2 and 1 mM ATP (Sigma Aldrich, A1852–1VL) in the presence of cMyc-tagged CK2α fusion protein (1 μM). Cells were incubated at 37 °C for 30 min, washed three times with cold 1% BSA in PBS (500 rcf, 5 min), and incubated on ice for 30 min with anti-cMyc clone 9E10 AlexaFluor 647 conjugate (Thermo Fisher Scientific, MA1980A647) at a 1:100 dilution in 1% BSA in PBS. Cells were washed two times with cold 1% BSA in PBS (500 rcf, 5 min), once with PBS (500 rcf, 5 min), and incubated for 15 min in PBS with Propidium Iodide Ready Flow (Thermo Scientific, R37169) live/dead cell stain. Cells were analyzed on a Beckman Coulter CytoFLEX flow cytometer.
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8

Human iPSC Line Maintenance Protocol

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A human iPSC line (IMR90) was used in this study and maintained following feeder-independent protocols (Ludwig et al., 2006 (link)). This iPSC line was obtained from WiCell (Madison, WI, USA) and was originally created from human fibroblasts transduced with lentivirus to overexpress OCT4, NANOG, SOX2, and LIN28 (Yu et al., 2007 (link)). iPSC colonies were cultured in mTeSR1 medium on a 6-well plate coated with Matrigel (BD Bioscience; San Jose, CA), and passaged using Versene (Life Technologies, Grans Island, NY, USA).
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9

Cellular Metabolite Quantification

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Cells were cultured as described above. At day 6, cells were detached from the plate with Versene (Life Technologies) and counted. At least one million cells were lysed in 60 μL 0.5% Triton-X in PBS. Metabolite concentrations were determined by commercial assay kits for Acetyl CoA, fumarate, glutamate, malate, NADPH, α-ketoglutarate (all Sigma), following the instructions of the manufacturer.
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10

Expansion of hPSC-derived Epicardial Cells

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After maintenance in LaSR basal medium containing 0.5 μM A83-01 for several passages, confluent hPSC-derived epicardial cells were split 1:3 to 1:6 at a density of 0.04 to 0.08 million cells/cm2 using Versene (Life Technologies) or Accutase onto gelatin-coated plates. When reaching more than 60% confluence, epicardial cells were cultured in EGM-2 medium containing 100 ng/ml VEGF for 5 days followed by 5 days in EGM-2 medium containing 2.5 μM A83-01.
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