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Phosphate buffered saline (pbs)

Manufactured by MP Biomedicals
Sourced in France, United States, United Kingdom

Phosphate-buffered saline (PBS) is a commonly used buffer solution in biological research and laboratory applications. It is an aqueous solution containing sodium phosphate and sodium chloride, with a pH of around 7.4. PBS is used to maintain the physiological pH and osmolarity of biological samples and solutions.

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27 protocols using phosphate buffered saline (pbs)

1

Tracking EV Uptake in Aged MSCs

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MSCs (2.5 × 105) from old and young individuals were cultured on slides (Sigma-Aldrich, St. Louis, MO, USA) pre-treated with poly-d-lysine (Sigma-Aldrich, St. Louis, MO, USA) in 6-well plates (Corning Inc., New York, NY, USA) for 8 h (day 1). MSC-derived EVs (2 × 107) from young and old individuals were stained with 10 μM 3-3′-diethylthiacarbocyanineiodide (DiI) and added to each culture of MSCs; PBS (MP Biomedicals, Illkrich-Graffenstaden, France) was added as a control. At 2, 3 and 6 days, the cells were washed three times with PBS (MP Biomedicals, Illkrich-Graffenstaden, France) and fixed with 4% (w/v) paraformaldehyde (Sigma-Aldrich, St. Louis, MO, USA) for 10 min, and then the slides were mounted using ProLong® Gold antifade mountant with 4′,6-diamidino-2-phenylindole (DAPI; (Thermo Fisher Scientific, Carlsbad, CA, USA). The cells were examined with an Olympus BX61 microscope using a DP71 digital chamber (Olympus, Tokyo, Japan) with software DP-Controller and DP-Manager software. A NeoScope JCM-6000 Plus scanning electron microscope (Nikon-Izasa, Barcelona, Spain) was used to take supplementary images.
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2

Porcine Knee Joint Preparation

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Porcine PFJs were obtained from the right hind legs of Large White pigs aged either 4–6 or 12 months old (John Penny & Sons, Leeds, UK), within 24 hrs of slaughter. The two ages were used to give a model of different bone properties such as elastic yield and modulus. Tissue samples were kept hydrated throughout preparation using phosphate buffered saline (PBS; MP Biomedicals LLC, UK) and stored at -20°C. Prior to testing, samples were thawed at room temperature.
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3

Preparation and Administration of CIMV-Based Vaccines

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CIMVs were prepared as previously described [37 (link)] with some modifications. Briefly, immature bone marrow-derived DCs or tsDCs were transfected with RNA-B16 or RNA-RLS40 precomplexed with cationic liposomes L or ML at N/P ratio 4/1 as described above. Transfected DCs were washed with serum-free media, resuspended in serum-free IMDM supplemented with 10 µg/mL cytochalasin B (AppliChem GmbH, Darmstadt, Germany) and incubated for 30 min under SC. After that, cells were vigorously vortexed for 30 s. CIMVs were collected by sequential centrifugation at 100× g (10 min, 4 °C), 600 g (20 min, 4 °C), and 15,000× g (30 min, 4 °C). The resulting pellet was washed with PBS (MP Biomedicals, Santa Ana, CA, USA) and centrifuged at 15,000× g (30 min, 4 °C). CIMVs were resuspended in 0.1 mL of PBS and stored at −80 °C until use. CIMV concentration was measured on the basis of the total protein concentration with Qubit Protein Assay kit (Thermo Fisher Scientific, Waltham, MA, USA ) [19 (link)]. CIMV-based vaccines were administered s/c at the crest area in the interscapular region at a dose of 15 µg of CIMVs (total protein counts) per mouse in 0.2 mL of Opti-MEM.
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4

Quantification of Astrocyte HNr Expression

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Cultured astroglial cells were harvested with 0.025% trypsin-EDTA, washed in cold PBS, fixed with 4% paraformaldehyde and permeabilized with 0.1% saponin in PBS (MP Biomedicals Inc., OH, USA) for 10 min. Then, the cells were incubated with rabbit anti-HNr antibody (1 μg/μl) in PBS-0.05% saponin for 1 h at 37°C followed by 40-min incubation with a FITC-conjugated anti-rabbit secondary antibody (1:100) in the same buffer. To determine the cut-off for HNr fluorescence, cells were incubated with secondary antibody only. Cells were washed, resuspended in PBS and analyzed by flow cytometry using a FACScan (Becton Dickinson). Data were analyzed with WinMDI 98 software.
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5

Automated Platelet Analysis in PBS

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PCs were diluted in the phosphate-buffered saline (PBS,
M.P. Biomedicals, LLC, 1:2 dilution) and subsequently
applied for assessment of PLT count, MPV, and PDW by an automated hematology analyzer (Sysmex XT-2000i,
Kobe, Japan).
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6

Lymphocyte Subpopulation Analysis by Flow Cytometry

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Identification of lymphocyte subpopulations in peripheral blood and mesenteric lymph nodes was performed using flow cytometry. Fifty microliters of heparinized blood or cell suspension from lymph nodes was incubated with monoclonal antibodies for 15 min in the dark at room temperature. Lymphocytes were identified using two combinations of antibodies—CD4/CD8a and CD3/B220—the detailed specifications of which are given in Table 2. After incubation, 500 μL of lysis solution (BD FACS Lysing Solution, BD Biosciences, San Jose, CA, USA) was added to the tubes and then the tubes were incubated for 15 min in the dark at room temperature and the contents of the tubes were washed twice with 1 mL PBS (MP Biomedicals, Illkirch-Graffenstaden, France). PBS solution (100 μL) was added to the tubes before measurement. The analyses were performed on the above-described flow cytometer. Proportions of lymphocytes are expressed as a percentage.
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7

Immunofluorescence Labeling of Tissue Sections

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Tissue sections from all groups were fixed in 4% PFA at room temperature for one hour. They were then washed with PBS, mounted on glass and incubated in a solution of 10% normal goat serum in PBS (MP Biomedical, UK) and 0.25% Triton X-100 (Sigma, Germany) for one hour. Next, the tissues were incubated with 100 µL of a primary antibody (anti-MBP, MBL, anti-NG2 and anti-OX-42; Millipore, Germany) at room temperature for 90 min or in the dark at 4 °C overnight. They were washed three times with PBS and stained with secondary antibodies (Alexa Fluor® 633 and 488, Invitrogen, Germany) that were diluted in PBS (1:100). Of note, a few tissue sections were processed without primary antibodies in order to examine the specificity of immunolabelling with the antibodies, and this resulted in no immunostaining.
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8

Fucosylated Chondroitin Sulfate Extraction

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Fucosylated chondroitin sulfate from the body walls of A. molpadioides were obtained in our previous work. Bio-Gel P-10/P-6/P-2 and Sephadex G-25 were purchased from Bio-Rad Laboratories and GE Healthcare Life Sciences, respectively. CS-E [60% of E-type unit, Code# CSR-NaCS-E2(SqC)10] was bought from Cosmo Bio Co., Ltd. Neurobasal (21103049), B27 (17504044), glutamax (35050061), penicillin and streptomycin (15140122) were obtained from Gibco. Poly-D-lysine (PDL, P6407), DNase I (D4513) Anti-tublin Ш (T8578) and Bovine serum albumin (BSA, B2064) were purchased from Sigma. PBS (092810305) and Triton X-100 (QR12914) are from MP. Papain (LS003119) was obtained from Worthington. Alexa flour 488 anti-mouse IgG (ab15105) came from Abcam. Pregnant Sprague-Dawley rats were obtained from SPF (Beijing) Biotechnology Co. Ltd. (Beijing, China). All other reagents were of analytical grade and obtained commercially.
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9

Isolation of Exosomes from MSCs

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MSCs from young (14 days) and old (270 days) rats were cultured with RPMI 1640 medium with GlutaMAX™ supplement, 10% exosome-depleted FBS (Thermo Fisher Scientific, Waltham, MA, USA) and 100 IU/ml penicillin-100 mg/ml streptomycin (Life Technologies, Madrid, Spain). Cells were cultured to 80% confluence, and the supernatants were collected after 48 h. Supernatants were centrifuged at 2000×g for 10 min at 4 °C and filtered using a sterile 0.22-μm filter (GE Healthcare Life Sciences, Little Chalfont, UK) to eliminate debris, and they were transferred into new ultracentrifugation tubes (Beckman Coulter, Mississauga, Canada) and centrifuged at 100,000×g for 2 h at 4 °C in an Optimal-90K ultracentrifuge with a 60 Ti rotor (Beckman Coulter, Mississauga, Canada). The last supernatants containing exosome-depleted FBS were removed, and the pellets were resuspended in 200 μl PBS (MP Biomedicals, Illkrich-Graffenstaden, France).
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10

Evaluating γ-secretase Inhibitor Effects on HPV16 Infection

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γ-secretase inhibitor (Compound E, referred to as XXI in this manuscript) was purchased from EMD Millipore (Billerica, MA) and dissolved in DMSO (Sigma-Aldrich, St. Louis, MO). We started testing different concentrations of XXI, 200 nM-3.2 μM (dilution factor 1:2), and 1 nM-250 nM (dilution factor 1:3), and 1 pM-900 pM (dilution factor 1:3). To test the effect of different concentrations of XXI on HPV16 PsV infection, we incubated cells on ice for 1 hour to slow down endocytosis, and prepared the DMEM-10 containing either XXI in DMSO or DMSO as control. After 1 hour of ice incubation, the media was washed off and DMEM-10 containing either XXI or DMSO was added to the wells. Following this, the cells were infected with HPV16 PsV and kept on ice for another 2 hours. After the ice incubation, the plates were directly put in the 37°C incubator for 48 hours. The cells were then collected via trypsinization (Corning, Manassas, VA) and washed three times with PBS (MP biomedicals, Solon, OH) by spinning at 3000 x g for 5 min. Percentage of infected HaCaT cells was calculated based on the number of GFP positive cells as measured by flow cytometer.
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