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71 protocols using phenformin

1

Immunization and ELISA for Antigen-Specific Antibodies

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Mice were immunized with 50 µg NP-(28)-CGG (Biosearch Technologies) in ImJect Alum (Thermo Scientific) via intra-peritoneal injection. Blood was collected at 14 days and assayed by ELISA. Serum Ig concentrations were determined using anti-mouse Ig as a capture antibody and developed with isotype-specific goat anti-mouse antibodies conjugated to HRP (Southern Biotech). Antigen-specific ELISA was performed by coating a plate with NP-(8)- or NP-(20)-BSA and developed with an isotype specific goat anti-mouse antibody conjugated to HRP. For immunizations with phenformin, mice were given water containing either vehicle (5 mg/ml sucralose, Sigma) or phenformin (1.8 mg/ml, Sigma) with vehicle in amber bottles one day before immunization, and water was changed twice per week.
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2

Phenformin Cytotoxicity Screening in Cancer Cells

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NHT, TPC-1 and 8505C were grown in complete medium until an 80% confluence was reached. Cells were then detached and seeded in 96 well flat plates at a density of 2×104cell/well. Complete medium was supplemented with increasing concentrations of phenformin (0, 0.001, 0.01, 0.1, 1, 10 mM, Sigma Aldrich), the concentrations of phenformin were chosen based on previous studies [7 (link), 49 (link), 50 (link)]. The incubation times were 7, 14 and 24 hours. At the end of treatment, 20 µl of WST-1 were added to wells; plates were then incubated for 30 minutes at 37°C in a 5% CO2 atmosphere. WST-1 is a colorimetric reagent, which, after cleavage of a tetrazolium salt, MTS, by mitochondrial dehydrogenases, results in the production of formazan by viable cells only. Absorbance was then measured at 450 nm by using a multimode plate reader (Victor NIVO Multimode Plate Reader, PerkinElmer). All experiments were performed in triplicates. Values of IC50s (concentrations necessary to reduce the cell viability by 50%) were calculated for the various cell lines from concentration-response curves by linear regression analysis (percent/inhibition against the negative natural logarithm of the molar concentration of phenformin).
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3

Characterization of Murine Pancreatic Tumor Clones

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The clonal cell lines described (E, H, V, K, M, N and T) were isolated from pancreatic tumors from KPC mice and have been previously described30 . Clonal lines 6419c5, 6694c2, 2838c3 and 6499c4 were derived from KPC mice and have also been previously described24 (link). KPC7940B cells were a gift from G. Beatty (University of Pennsylvania). KPC-MT3 cells were a gift from D. Tuveson (Cold Spring Harbor Laboratory). PATC53 cells were obtained from ATCC. Cells were maintained in high-glucose DMEM (Gibco) supplemented with 10% fetal bovine serum (Corning) and routinely tested for mycoplasma contamination using MycoAlert Plus (Lonza). DMSO, oligomycin, phenformin and aminooxyacetic acid were obtained from Sigma, trans-ISRIB was obtained from Cayman Chemical and GCN2iB was obtained from MedChemExpress. IACS-10759 was obtained from Selleck Chem. KPC clonal lines were genotyped for KrasG12D recombination using primer sets from Jackson Laboratories.
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4

Synchronizing C. elegans Developmental Stages

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Wild-type (Bristol N2), CB4088 him-5(e1490) males, DH1390 rme-2(b1008), LIU1 ldrIs1 [dhs-3p::dhs-3::GF+unc-76(+)] and a transgenic strain bIs1(vit-2p::vit-2::GFP) expressing a fusion of YP170 were used in this study. For the measurements of different developmental stages, synchronized worms were prepared via a two-generation egg lay method. For the first generation, ~10–20 adult worms were placed on the NGM OP50 plate and incubated at 20 °C for 2 h, and then the worms were removed. After an 80-h incubation at 20 °C, the laid eggs/embryos grew to gravid worms. Approximately 10–20 synchronized gravid worms were then picked and placed on the NGM OP50 plate and incubated at 20 °C for 2 h. After that, the gravid worms were removed and the synchronized embryos were incubated at 20 °C until appropriate stages for observation. This two-generation egg lay method can minimize the time error of synchronization, ensure more reproducible measurement results and avoid the starvation effect such as synchronization by L1 starvation arrest. The fixed LipidTOX staining of worms was carried out as previously described22 (link). Phenformin was purchased from Sigma-Aldrich. Sodium azide was purchased from Sigma-Aldrich and used to anesthetize worms for microscopy.
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5

AICAR and AMPK Pathway Modulation

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5-amino-1-β-D-ribofuranosyl-imidazole-4-carboxamide (AICAR) was purchased from Toronto Research Chemicals Inc (North York, Canada). Uridine, cytidine, adenosine, thymidine, deoxythymidine triphosphate (dTTP), uracil, phenformin and 5-fluoroUridine were purchased from Sigma-Aldrich Co. LLC, (St Louis, MO). Mouse monoclonal antibody against LKB1 was purchased from Abcam (Cambridge, MA). Antibodies against AMPKα, phospho-AMPKα (Thr172), total caspase 3, cleaved caspase-3, PARP, and phospho-acetyl-coA carboxylase (phospho-ACC, Ser79) were purchased from Cell Signaling Technology (Beverly, MA). Mouse monoclonal antibody and polyclonal antibody against TIF-IA were purchased from Santa Cruz Biotechnology Inc (Dallas, TX) and Abcam, respectively. Mouse polyclonal anti-beta-actin antibody was purchased from Sigma.
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6

Metformin and Phenformin Regulate TGF-β Signaling

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Metformin and phenformin were purchased from Sigma-Aldrich (St. Louis, MO, USA); human TGF-β1 and antibodies against β-actin, p-AMPKα Thr172, AMPKα, p-ACC Ser79, ACC, Slug, p-Smad3 Ser423/425, and Smad2/3 were from Cell Signaling Technology (Beverly, MA, USA); ELISA kits for human and mouse TGF-β1, antibodies against E-cadherin, and vimentin were from Abcam (Cambridge, MA, USA); monoclonal antibody against LKB1 was from Santa Cruz Biotechnology (Santa Cruz, CA, USA); growth factor-reduced Matrigel and monoclonal antibody against β-catenin were from BD Biosciences (San Jose, CA, USA); Lipofectamine 2000, 4′,6-diamidino-2-phenylindole (DAPI), fluorescein isothiocyanate (FITC)-conjugated donkey anti-rabbit antibodies were from Life Technologies (Grand Island, NE, USA); Chamber slides was from EMD Millipore (Billerica, MA, USA).
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7

Myeloma Cell Lines and Patient Samples

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MM cell lines (MMCLs) were from the National Cancer Institute, Bethesda, MD and cultured as described16-18. BM aspirates were obtained from patients after approval by the UC Cancer Institute Institutional Review Board. Malignant PCs were purified by positive CD138 microbead selection (Miltenyi Biotec, San Diego, CA). Bortezomib was from ActiveBiochem (Maplewood, NJ), metformin (1,1–dimethyl biguanide hydrochloride), phenformin: N-(2-Phenylethyl) imidodicarbonimidic diamide monohydrochloride, phenethyl-biguanide) and reagent grade chemicals from Sigma Chemical Co. (St. Louis, MO). Plasmids pCMV-GRP78-myc-WT or pCMV-GRP78-myc-P495L were from Addgene (Cambridge, MA).
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8

Metabolic Modulation in Cell Cultures

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Metformin, phenformin, 2-deoxy-D-glucose (2DG), N-acetyl-L-cysteine (NAC), and galactose were from Sigma (Darmstadt, Germany). (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide (MTT) was purchased from Dia m (Moscow, Russia). CellTrackerTM Green (CMFDA) dye and DAPI were from Thermo Fisher (Waltham, MA, USA). Glycolysis Stress Test Kit (Agilent, Santa Clara, CA, USA) and Mito Stress Test Kit (Agilent, USA) were used.
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9

Colorectal Cancer Cell Line Culture

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The rectal cancer cell lines SW837 and SW1463">SW1463 and the colon cancer cell lines HCT116 and LS513 were obtained from the ATCC. Rectal and colon cancer cell lines were cultured in Leibovitz's 15 (Welgene) at 37°C in an atmosphere containing 1% CO2 or in RPMI 1640 (Lonza) at 37°C in an atmosphere containing 5% CO2 containing 10% FBS (Corning) and gentamycin (50 μg/mL; Lonza), respectively. 5‐Fluorouracil (5‐FU), TGFBR inhibitor (SB525334), metformin and phenformin were obtained from Sigma‐Aldrich. The signal transducer and activator of transcription 3 (STAT3) inhibitor STATTIC was purchased from Calbiochem. For assessing apoptosis, apoptotic protein assay (ARY009) was purchased and was performed according to the instructions provided using the R&D system.
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10

Hypoxia Regulation of Ovarian Cancer

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OvCa cells were maintained in standard DMEM supplemented with 10% FB-Essence (VWR Life Science SeraDigm, Radnor, PA) with 1% penicillin/streptomycin (Corning, Corning, NY), 1% MEM non-essential amino acids (Corning) and 1% MEM vitamins (Corning). All cell lines were genotyped to confirm their authenticity (IDEXX Bioresearch short tandem repeat marker profiling every 3 months), and were used between 2-12 passages from first thaw. All experiments were carried out in low glucose DMEM (VWR Life Science) supplemented as above. The pLX304 SPHK1-V5 lentiviral expression vector was purchased from DNASU (Tempe, AZ). The constitutively active HIF1α (P402A/P564A) and HIF2α (P405A/P531A) plasmids were a gift from William Kaelin (27 (link)) obtained through Addgene (Cambridge, MA). 5HRE-GFP reporter was a gift from Martin Brown and Thomas Foster obtained through Addgene (28 (link)). SPHK1 siRNA was obtained from GE Dharmacon (Lafayette, CO). Metformin, phenformin, CoCl2, and thiazolyl blue tetrazolium bromide were purchased from Sigma Aldrich (St. Louis, MO). S1P (Huzzah S1P) was purchased from Avanti Polar Lipids (Alabaster, AL). Hypoxia was induced through 1% O2/5% CO2 using Hypoxia Incubator Chamber by STEMCELL Technologies (Vancouver, BC, Canada).
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