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9 protocols using anti fis1

1

Detailed Western Blot Methodology

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Western blot were performed as previously described [13 (link)]. The following primary antibodies have been used: anti‐actin (Cell Signaling, Danvers, MA, USA, 4970), anti‐Drp1 (BD Bioscience 611113), anti‐pS616‐Drp1 (Cell Signaling 4494), anti‐pS637‐Drp1 (Cell Signaling 6319), anti‐Mfn2 (Abcam ab56889), anti‐Mfn1 (Santa Crux sc‐50330), anti‐Opa‐1 (BD Bioscience 612607), anti‐Fis1 (Abcam ab71498), anti‐Mff (Abcam ab129075), anti‐pT202/204‐ERK1/2 (Cell Signaling 4370), anti‐ERK1/2 (Cell Signaling 4695), anti‐Hsp90 (Cell Signaling 4877), anti‐pSer2481‐mTOR (Cell Signaling 2974), anti‐mTOR (Cell Signaling 2983), anti‐MnSOD (Enzo Life Sciences ADI‐SOD‐110), anti‐LC3B (Cell Signaling 3868), anti‐cFos (Cell Signaling 4384), anti‐GAPDH (Cell Signaling 2118), anti‐Akt1 (Cell Signaling 2938), and anti‐pThr308‐Akt (Cell Signaling 4056). All primary antibody incubations were followed by incubation with appropriated secondary HRP‐conjugated antibodies (GE Healthcare or Cell Signaling) in 5% milk plus 0.1% Tween‐20 (Sigma P2287). Detection of protein signals was performed using Clarity Western ECL substrate (Bio‐Rad 170‐5061) and Amersham Imager 600. Stripping of the membranes for reprobing has been performed using buffer containing 1% Tween‐20 (Sigma P2287), 0.1% SDS (Sigma 71729), and 0.2 M glycine (VWR M103) at pH 2.2 (two washes for 10 min).
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2

Mitochondrial Dynamics and Apoptosis

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SMI was purchased from CTQ Pharmaceutical Group Co. Ltd. (Hangzhou, China), the same batch as previous study (Yu et al., 2019 (link)). Cell culture supplies were purchased from Gibco (Grand Island, NY, USA). Anti-PI3K, anti-Akt, anti-Phospho-Akt (Ser473), anti-GSK-3β, anti-Phospho-GSK-3β (Ser9), anti-GAPDH, anti-AMPKα, anti-Phospho-AMPKα (Thr172), anti-Phospho-DRP1 (Ser616), anti-Phospho-DRP1 (Ser637), anti-Bax, anti-Bcl-2, anti-Caspase3, and anti-cleaved-Caspase3 were purchased from Cell Signaling Technology (Danvers, MA, USA). Anti-OPA1, anti-MFN2, and anti-FIS1 were purchased from Abcam (Cambridge, MA, UK). Anti-DRP1 and anti-MFN1 were purchased from Santa Cruz Biotechnology (Dallas, Texas, USA). MitoSOX Red, MitoTracker Green, and MitoTracker Deep Red were purchased from Invitrogen (Eugene, USA).
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3

Mitochondrial Dynamics and DNA Damage Markers

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The following primary antibodies were used for western blotting: anti-MFN1 (1:1000, Cell Signaling Technology, 14739S), anti-MFN2 (1:1000, Cell Signaling Technology, 9482S), anti-OPA1 (1:1000, Cell Signaling Technology, 80471S), anti-DRP1 (1:1000, Cell Signaling Technology, 8570S), anti-DRP1 p-S616 (1:1000, Cell Signaling Technology, 3455S), anti-FIS1 (1:1000, Abcam, ab156865), anti-H2A.X p-S139 (1:1000, Cell Signaling Technology 2577S), anti-VDAC (1:1000, Cell Signaling Technology, 4661S), anti-β-tubulin (1:1000, Cell Signaling Technology, 2146S) and horseradish peroxidase-conjugated anti-rabbit IgG H&L (1:10,000, Abcam, ab205718).
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4

Antibody Characterization for Cell Biology

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Anti-Tim23 (1/1,000), anti-Tom20 (for western blots, 1/1,000, for immunofluorescence, 1/200), anti-Bcl2-L-13 (1/1,000) (Proteintech), anti-cytochrome c (1/1,000) (BD biosciences), anti-Bcl2-L-13 (1/500), anti-GAPDH (1/1,000), anti-Fis1 (1/1,000), anti-α-tubulin (1/1,000) (Abcam), anti-LC3B (for western blots, 1/1,000, for immunofluorescence, 1/100), anti-HA (for western blots, 1/1,000, for immunofluorescence, 1/200), anti-Drp1Ser637 (1/500), anti-Drp1Ser616 (1/1,000), anti-Mfn2 (1/1,000), anti-cleaved caspase 3 (1/1,000) (Cell Signaling Technology), anti-ATP synthase subunit beta (for western blots, 1/1,000, for immunofluorescence, 1/200) (Life Technologies), anti-Drp1 (for western blots, 1/1,000, for immunofluorescence, 1/100), anti-Opa1 (1/1,000) (BD Transduction Laboratories), anti-FLAG (for immunofluorescence, 1/200) (Sigma), anti-Mfn1 (1/1,000) (Abnova), anti-ubiquitin (for immunofluorescence, 1/200) (Enzo Life Science), anti-Phospho-Serine/Threonine (Upstate), anti-mCherry (1/500) (Clontech) and anti-RFP23 (link) (1/1,000) antibodies were used in this study.
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5

Western Blot Analysis of Mitochondrial Proteins

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Proteins from HUVECs were extracted with RIPA lysis buffer (Beyotime, Shanghai, China) containing 1% PMSF (Beyotime, Shanghai, China) and quantified using a BCA protein assay kit (Thermo Fisher Scientific, Waltham, MA, USA). Equal amounts of protein (30 μg) were separated by 10% sodium dodecyl sulfate polyacrylamide gel electrophoresis (SDS-PAGE), transferred to 0.22-μm PVDF membranes (Millipore, Billerica, MA, USA), and incubated overnight at 4 °C with specific antibodies: anti-p16, anti-p21, anti-FIS1, anti-SAHH (Abcam, Cambridge, UK), anti-p53, anti-Drp1, anti-OPA1, anti-MFN1, anti-MFN2, anti-DNMT1, anti-DNMT3A, anti-DNMT3B, and anti-GAPDH (Cell Signaling Technology, Danvers, MA) followed by incubation with horseradish peroxidase-conjugated secondary antibodies (Cell Signaling Technology, Danvers, MA). The dilution ratio was 1:1000 for the primary antibodies and 1:10,000 for the secondary antibodies. Protein bands were visualized with Super Signal Chemiluminescence Substrate (Thermo Scientific, Waltham, MA, USA) and GAPDH was used as a control. Images were captured using the FluorChem E system (Protein Simple, Minneapolis, MN, USA) and band densities were quantified using image J software (NIH, Bethesda, MD, USA). The densities of the bands were normalized to that of GAPDH.
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6

Mitochondrial Dynamics and Apoptosis Regulation

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Anti-Tim23 (1/1000), anti-Tom20 (for western blots, 1/1000, for immunofluorescence, 1/200), anti-Bcl2-L-13 (1/1000) (Proteintech), anti-cytochrome c (1/1000) (BD biosciences), anti-Bcl2-L-13 (1/500), anti-GAPDH (1/1000), anti-Fis1 (1/1000), anti-α-tubulin (1/1000) (Abcam), anti-LC3B (for western blots, 1/1000, for immunofluorescence, 1/100), anti-HA (for western blots, 1/1000, for immunofluorescence, 1/200), anti-Drp1Ser637 (1/500), anti-Drp1Ser616 (1/1000), anti-Mfn2 (1/1000), anti-cleaved caspase 3 (1/1000) (Cell Signalling Technology), anti-ATP synthase subunit beta (for western blots, 1/1000, for immunofluorescence, 1/200) (Life Technologies), anti-Drp1 (for western blots, 1/1000, for immunofluorescence, 1/100), anti-Opa1 (1/1000) (BD Transduction Laboratories), anti-FLAG (for immunofluorescence, 1/200) (Sigma), anti-Mfn1 (1/1000) (Abnova), anti-ubiquitin (for immunofluorescence, 1/200) (Enzo Life Science), anti-Phospho-Serine/Threonine (Upstate), anti-mCherry (1/500) (Clontech) and anti-RFP23 (link) (1/1000) antibodies were used in this study.
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7

Analyzing Drp1 and PP1 in SOD1-ALS

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The lumbar region of the spinal cord was collected from WT and SOD1 G93A mice and sonicated in a lysis buffer (50 mM Tris-Cl pH 7.4, 150 mM NaCl, 10% Glycerol, 1% Triton-X100 and 1 mM EDTA). After protein quantification using the BCA method, 30 µg of protein was loaded per well and separated by SDS-PAGE. The loaded protein was transferred to a PVDF membrane, and this membrane was incubated in a blocking solution (3% BSA/1 ×TBST) for 1 h. The membrane was incubated with primary antibody diluted 1:1000 with blocking solution overnight at 4 °C, then washed three times in 1xTBST and incubated with secondary antibody diluted 1:5000 with 5% Skim Milk/1xTBST. The antibodies used were anti-Drp1 (BD, Cat. 611113), anti-phospho Drp1 S616 (Cell signaling, Cat. 3455), anti-Fis1 (Abcam, Cat. Ab96764), anti-PP1α (Santa Cruz, Cat. sc-443), anti-phospho-PP1α (Cell Signaling, Cat. #2581), PP1β (Santa Cruz, Cat. sc-373782), PP1γ (Santa Cruz, Cat. sc-6109), and anti β-actin (Sigma, Cat. A5441). The secondary antibodies used were anti-mouse and anti-rabbit IgG conjugated to horseradish peroxidase. The membrane was washed three times in 1xTBST, and the signals expressed by the protein were visualized using an ECL kit (Thermo, Cat. 32106).
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8

Detecting Oligomeric Dynamin-Related Protein 1

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For detecting oligomeric Drp1, cultured cortical neurons were collected in lysis buffer (100 mM NaCl, 5 mM EDTA, 0.5% Triton X-100, 50 mM Tris-Cl, protease and phosphatase inhibitor cocktails, pH 7.4). Then, non-reducing SDS-PAGE was performed using samples that were either left untreated or treated with DTT (1 μM). For mitochondrial fractionation, cultured cortical neurons were rinsed with PBS and collected in pre-chilled mitochondria buffer (250 mM sucrose, 10 mM KCl, 5 mM MgCl2, 1 mM EDTA, 1 mM EGTA, 20 mM HEPES, protease and phosphatase inhibitor cocktails, pH 7.5, 4 °C). Supernatant was obtained by centrifugation at 500 × g for 5 min and 10 000 × g for 15 min at 4 °C. The pellet and supernatant represented the mitochondrial and cytosolic fractions, respectively. Immunoblotting was performed using the following antibodies: anti-Drp1 (1:2000), anti-pDrp1S616 (1:500), anti-CDK5 (1:1000), anti-p35 (1:1000), anti-β-Actin (Sigma-Aldrich, #A5441; 1:2000), anti-HSP60 (Enzo Life Sciences, Farmingdale, NY, USA, #ADI-SPA-806; 1:1000), anti-GAPDH (Santa Cruz Biotechnology, #6C5; 1:1000), anti-Mfn2 (Abcam, Cambridge, MA, USA, #ab56889; 1:1000), anti-Opa1 (BD Biosciences, #612606; 1:1000), anti-Mff (Sigma-Aldrich, #HPA010968; 1:1000) and anti-Fis1 (Abcam, #ab96764; 1:1000).
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9

Proximity Ligation Assay for Protein-Protein Interactions

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Cells were fixed with 4% PFA for 10 min and then permeabilised with 0.1% Triton X‐100 in PBS for 15 min. A proximity ligation assay to assess protein–protein interaction was carried out with the Duolink in situ red mouse/rabbit kit (Merck) as per the manufacturer's instructions. Anti‐Drp1 (1:300, BD Biosciences) and Anti‐Fis1 (1:1,000 Abcam) antibodies were incubated for one hour at room temperature at the appropriate primary antibody step. For WT vs. DKO, five fields of view were confocal‐imaged with a Zeiss 40× oil objective (NA = 1.3) with approximately 15 cells per image for each experimental repeat. The number of red dots was then divided by the number of nuclei to obtain an average dot number per cell. For transfected cells, images of individual cells was taken with a Zeiss 63× oil objective (NA = 1.4). The number of dots was then counted.
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