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18 protocols using anti cd8a

1

Intracellular Cytokine and Phospho-flow Analysis

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For intracellular cytokine staining, murine cells were restimulated after 72 h of culture with PMA (50 ng ml−1), Ionomycin (1 µg ml−1, both from Sigma-Aldrich) and brefeldin A (5 µg ml−1; Biolegend) for 4 h and fixed with 2% para-formaldehyde. Staining of transcription factors was performed without restimulation using the FOXP3/Fixation-Kit (eBioscience, 00–5521–00). Following antibodies were used for murine cell-analysis: anti-CD8a (eBiosciences, 53–6.7), anti-CD44 (eBiosciences, IM7), anti-CD62L (eBiosciences, MEL-14), anti-IFN-y (Biolegend, XMG1.2), anti-IL-17A (eBiosciences, eBio17B7), anti-RORyt (eBiosciences, B2D) or anti-T-BET (eBiosciences, eBio4B10). The cells were measured on FACSCalibur or FACSAria™ III (both BD) and analyzed with FlowJo Software (FlowJo LLC). For phospho-flow the cells were harvested after 48 h of culture, rested for 4 h and treated with 100U/ml rhIL-2 for 2 h, fixed and permeabilised using Lyse/Fix-Buffer (557870, BD) and Perm-BufferIII (558050, BD) then stained with anti-P-STAT5Y694 (eBiosciences, SRBCZX), anti-P-AKTS473 (Cell Signaling, D9E), anti-P-AKTY308 (Cell Signaling, D25E6), anti-P-FOXO1/3a (Cell Signaling, #9464) or anti-P-S6S235/236 (Cell Signaling, D57.2.2E).
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2

Flow Cytometry Analysis of Murine Immune Cells

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Spleens were homogenized by manual disruption and red cells were lysed as described above. The cells were resuspended at 4°C in FACS buffer (PBS, 5% FBS and 0.1% sodium azide). Antibodies were incubated with cells for 30 min at 4°C at the indicated dilution and washed with FACS buffer before resuspension in fresh FACS buffer. Samples were analyzed on a Cyan flow cytometer (Dako) or an LSR-II flow cytometer (BD). The antibodies used were as follows: anti-Ly6G (48–5931-82; eBioscience; dilution 1/200), anti-CD11c (17–0114-81; eBioscience; dilution 1/200), anti-CD19 (48–0193-82; eBioscience; 1/200), anti CD11b (17–0112-82 or 45–0112-80; eBioscience), anti-CD8a (11–0081-82; eBioscience; 1/400 dilution), anti-CD4 (558107; BD), anti-F4/80 (12–4801-82; eBioscience; 1/200), anti-CD115 (12–1152-82; eBioscience; 1/250), anti CD45.1 (25–0453-82; eBioscience; 1/200), anti-CD45.2 (17–0454-81; eBioscience; 1/200), and anti-Ly6C (53–5932; eBioscience; 1/200).
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3

Analyzing Lung-Resident Memory CD8+ T Cells

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Lung-resident memory CD8+ T cells were analyzed as previously described (34 (link)). Mice were intranasally infected with H1N1 or H5N1 (2:6) virus. On day 30 postinfection, mice were intravenously injected with 1 μg anti-CD8β antibody 5 minutes before tissue harvest. Lung tissues were perfused with PBS and single-cell suspensions were prepared after digestion with collagenase as described before. Cells were blocked first with FcRγIII/II antibody and stained with H-2Db restricted tetramer conjugated to fluorophore R-phycoerythrin (PE) (NP366-374 ASNENMETM). Tetramer-labeled cells were washed and stained with anti-CD4 (2 μg/ml; clone RM4-4; BioLegend), anti-CD3 (2 μg/ml; clone 145-2C11; eBiosciences), anti-CD8a (1 μg/ml; clone 53-6.7; eBiosciences), anti-CD44 (clone IM7; BioLegend), anti-CD103 (2 μg/ml; clone 2E7; eBiosciences), and anti-CD69 (clone H1.2F3; BioLegend). Dead cells were stained with the Live/Dead fixable near-IR staining kit (Life Technologies) in PBS for 15 minutes on ice. Surface-stained samples were fixed with FACS buffer containing 0.1% formaldehyde and analyzed using the BD LSR-II flow cytometer. Data analysis was performed using FlowJo software (Treestar Corp.).
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4

Glioma Model and DC Vaccine Efficacy

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Female C57BL/6j mice (6–8 weeks old) were anesthetized with a mixture of medical oxygen and isoflurane (induction: 5%; maintenance: 2%) and intracranially injected with 2 × 104 viable GL261 glioma cells. The injection was performed using a stereotactic device 2 mm lateral and 2 mm posterior to the bregma and 3 mm below the dura mater according to a previously described protocol [14 (link)]. The skin was sutured, and meloxicam was administered subcutaneously (1 mg/kg, 2 mg/mL) to manage post-operative pain. To prepare the DC vaccine, cell death was induced in GL261 cells in vitro by PS-PDT or MTX as described above. The mice were injected intraperitoneally with a suspension containing 1 × 106 of the prepared DCs (as described above) on days 2, 6, 10, and 17 after intracranial injection of viable GL261 cells. Local (inguinal and axillary) draining lymph nodes were collected on day 37 after intracranial injection with GL261 cells. The immune cells in the draining lymph nodes were stained by anti-CD8a (eBioscience, 12-0081-81), anti-CD45 (Biolegend, 103125), mouse Fc block (eBioscience, 16-0161-85), anti-CD11b (Invitrogen, 12-0112-83) and anti-CD11c (BD Pharmingen, 561022) and analyzed on a BD FACS Canto II flow cytometer.
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5

Flow Cytometry Immunophenotyping Protocol

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Cells were pre-incubated with anti-CD16/CD32 Fc blocking antibody (eBioscience) to block non-specific staining. Antibody cocktails were added and cells incubated at 4°C for 30 min. Intracellular staining for FoxP3 was performed by pretreating with a permeabilization kit from eBioscience. The following fluorochrome-conjugated anti-mouse antibodies were used to stain the cells: anti-CD3, anti-CD4, anti-CD8a, anti-GR1, anti-CD11b, anti-CD11c, anti-CD25, anti-NK1.1, anti-CD19, and anti-FoxP3, all purchased from eBioscience. Phycoerythrin conjugated R9F-dextramer-PE was obtained from Immudex. A FACSCalibur (BD Biosciences) was used for acquisition of flow cytometry data and analysis was performed using WinList 7.0 (Verity Software, Topsham, ME, USA).
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6

Leukocyte Phenotyping by Flow Cytometry

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Blood was collected by retro-orbital bleeding using heparinized capillaries, and erythrocytes were removed using ammonium chloride and washed twice. Subsequently, cells were stained with fluorescently labeled anti-CD8a, anti-CD4, anti-Thy1.2, anti-CD11a, and anti-CD49d antibodies (EBioscience, San Diego, CA) for 20 min. Flow cytometry was performed using a BD Fortezza cell analyzer.
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7

Characterization of Thymocytes and Splenocytes

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Thymocytes and splenocytes from wild type and DJ-1-deficient mice were characterised by using surface and intracellular staining with relevant antibodies. In brief, thymocytes and splenocytes were collected and used for surface staining for anti-CD4, anti-CD8a, anti-CD25, anti-CD62L, anti-CD44 (eBioscience, Germany) or other antibodies depending on the experiment and washed with PBS. Cells were fixed with Foxp3 fixation/permeabilization buffer (eBioscience, Germany) for intracellular staining and incubated for 30 minutes. After incubation, cells were washed with 1x permeabilization buffer, exposed to added intracellular monoclonal antibodies for Foxp3 and incubated for additional 30 minutes. Cells were washed again with permeabilization buffer and PBS was added to acquire the cells on a flow cytometer (FACS-calibur from Becton Dickinson; Heidelberg, Germany).
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8

Immunofluorescent Staining of Tissue Sections

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MGs were fixed and frozen sections were stained with anti-CD4 (eBiosciences, 16-0041-82), anti-CD8a (eBiosciences, 16-0081-82) antibodies (1:500) and anti-GFP (CD11c-DTR:GFP, Abcam, ab5450, 1:200) and mounted with Vectashield + DAPI (Vector Laboratories) for nuclear staining.
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9

T Cell Activation and Analysis

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For T cell activation, total PBMC samples from healthy donors (ALLCELLS, Alameda, CA) were enriched for CD3+ T cell populations using CD3 MicroBeads (Miltenyi Biotec, Auburn, CA, cat # 130-050-101) according to manufacturer’s instructions. Cells were then maintained in OpTmizer CTS T Cell expansion SFM plus T cell expansion supplement (Gibco, Grand Island, NY, cat # A1048501) complete with 5% CTS Immune Cell SR (Gibco, cat # A2596101), 2 mM Glutamine (Gibco, cat # 35050-061) and P/S solution. T cells were activated using Dynabeads Human T-Activator CD3/CD28 beads (Gibco, cat # 11131D). Surface FACS using anti-CD69 (Biolegend, London, UK, cat # 310904) staining was used to detect and confirm the activated state of T cells. TGFβ neutralizing antibody was added to cells within 24 h, and after 72 h incubation, cells were washed and stained with anti-CD4 (BD Biosciences, cat # 560768) and anti-CD8a (eBioscience, Grand Island, NY, cat # 56-0086-82) antibodies and subsequently analyzed with flow cytometry.
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10

Comprehensive Immunophenotyping by Flow Cytometry

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The following fluorochrome-conjugated antibodies were used for flow cytometry. Anti-CD3ε (Clone ID, 145-2C11), anti-CD5 (53-7.3), anti-CD19 (1D3), anti-B220 (RA3-6B2), anti-CD11b (M1/70), anti-CD 11c (N418), anti-NK1.1 (PK136), anti-TCRγδ (eBioGL3), anti-Gr-1 (RB6-8C5), anti-FcεR1 (MAR-1), anti-CD4 (RM4-5), anti-CD8a (53-6.7), anti-CD49b (DX5), anti-TER119 (TER-119), anti-IL-7Rα (A7R34), anti-Thy1.2 (30-H12), anti-CD44 (IM7), anti-c-Kit (2B8), anti-Sca-1 (D7), anti-CD45.1 (A20), anti-CD45.2 (104), anti-IL-13 (eBio13A), anti-IFN-γ (XMG1.2), anti-IL-5 (TRFK5), anti-IL-17A (eBio17B7), anti-RORγt (AFKJS-9) and anti-T-bet (4B10) antibodies were from eBioscience. Anti-KLRG1 (2F1), anti-IL-4 (11B11), anti-Ki67 (B56) and anti-GATA-3 (L50-823) antibodies were from BD Biosciences. Anti-ST2 antibody (DJ8) was from MD Bioproducts. Anti-IL-17RB antibody (752101) was from R&D Systems. recombinant IL-25 and IL-33 were from R&D Systems. For in vitro cell culture, recombinant IL-2, IL-7, IL-3, SCF, IL-4, IL-12, IL-1β, IL-6, IL-23 and TGF-β were from Peprotech or R&D Systems, and neutralizing antibodies, including anti-IL-4 (11B11), anti-IL-12 (C17.8) and anti-IFN-γ (XMG1.2), were from Harlan Laboratories. LIVE/DEAD fixable dead cell stain kit was from Life Technologies.
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