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21 protocols using eclipse light microscope

1

Breast Cancer Spheroid Assay with Citral

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Spheroids of breast cancer cells were developed and cultured as previously described [13 (link)] using a serum-free mammary epithelium basal medium (Gibco, USA). After 7 days of culture, the numbers and morphology of spheroids were observed using a Nikon Eclipse light microscope. Then, the MDA-MB-231 cells-derived spheroids were treated with citral at different concentrations (2.5, 5.0 and 10.0 μg/mL) for 48 h. After the treatment period, vehicle control and citral treated spheroids were observed under Nikon Eclipse light microscope (the image of 4 random areas per well were taken for each group, and the experiment was carried out in triplicate) and the average volume of the spheroid was calculated using V = (4/3) π R3. (n = 12 images per group). The harvested spheroids were also dissociated into single cells by incubating the spheroids in enzymatic solution using 0.25% trypsin-EDTA (Gibco USA) for 30 min followed by mechanical dissociation using pipetting. The harvested single cells suspension were subjected to the following assays.
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2

Airway Inflammation and Mucus Secretion

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The remaining six mice in each group were used for histopathological examination. Their lungs were fixed with zinc fixative (BD Biosciences, Franklin Lakes, NJ, USA). After separation of the lobes, 2-mm-thick blocks were taken for paraffin embedding. The embedded blocks were sectioned (thickness 3 μm), and the slices were stained with alcian blue (AB) to evaluate the degree of mucus secretion in the bronchial epithelium (from proximal to distal parts). To determine the number of eosinophils in the submucosa of the airway, the slices were also stained with a slightly modified original luna stain [26 ]. The slices were immersed in a hematoxylin solution and then in Biebrich scarlet solution for 15 and 20 min, respectively. After a rinse with tap water, the slices were dipped in 1 % hydrochloric acid (in ethanol) six times, followed by five dips in a 0.5 % lithium carbonate solution. Five randomly selected visual fields were photographed by means of a light microscope (400× magnification). The number of eosinophils was determined. Histopathological examination of inflammatory cells and epithelial cells in the airway was performed under a Nikon ECLIPSE light microscope (Nikon Co., Tokyo, Japan).
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3

Histopathological Analysis of Airway Inflammation

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All mice were used for pathological examination. The lungs were fixed by 10% neutral phosphate-buffered formalin. After separation of the lobes, 2-mm-thick blocks were taken for paraffin embedding. Embedded blocks were sectioned at a thickness of 3 µm, and then stained with May-Grunwald’s stain solution (Nacalai tesque, Inc, Kyoto, Japan) and Giemsa’s azur eosine methylene blue solution (Merck KGaA, Darmstadt, Germany) to evaluate the degree of infiltration of eosinophils and lymphocytes in the airway from proximal to distal. The sections were stained with periodic acid-Schiff (PAS) to evaluate the degree of proliferation of goblet cells in the bronchial epithelium. A pathological analysis of inflammatory cells and epithelial cells in the airway was performed using a Nikon ECLIPSE light microscope (Nikon Co., Tokyo, Japan). The degree of infiltration of eosinophils and lymphocytes in the airway or proliferation of goblet cells in the bronchial epithelium was graded in a blinded fashion: 0, not present; 1, slight; 2, mild; 3, moderate; 4, moderate to marked; 5, marked. ‘Slight’ was defined as less than 20% of the airway with eosinophilic inflammatory reaction or with goblet cells stained with PAS; ‘mild’ as 21–40%; ‘moderate’ as 41–60%; ‘moderate to marked’ as 61–80%; and marked as more than 80% of the airway [8 (link), 16 (link)].
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4

Quantifying Airway Inflammation and Remodeling in Mice

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The remaining 6 mice in each group were used for pathological examination. The lungs were fixed by a 10% neutral phosphate-buffered formalin solution. After separation of the lobes, 2-mm-thick blocks were taken for paraffin embedding. Embedded blocks were sectioned at a thickness of 3 μm and then stained with hematoxylin and eosin (H & E) to evaluate the degree of infiltration of eosinophils and lymphocytes in the airway from proximal to distal. The sections were stained with periodic acid-Schiff (PAS) to evaluate the degree of proliferation of goblet cells in the bronchial epithelium. A pathological analysis of inflammatory cells and epithelial cells in the airway was performed using a Nikon ECLIPSE light microscope (Nikon Co., Tokyo, Japan). The degree of infiltration of eosinophils and lymphocytes in the airway or proliferation of goblet cells in the bronchial epithelium was graded in blinded fashion as: 0, not present; 1, slight; 2, mild; 3, moderate; 4, moderate to marked; 5, marked. ‘Slight’ was defined as less than 20% of the airway with eosinophilic inflammatory reaction or with goblet cells stained with PAS; ‘mild’ as 21 - 40%; ‘moderate’ as 41 - 60%; ‘moderate to marked’ as 61 - 80%; and marked as more than 80% of the airway
[22 (link), 23 (link)].
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5

Histological Analysis of Murine Airway Inflammation

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Six of the 12 mice from each group were used for pathologic examination. Lungs were fixed in 10 % neutral phosphate-buffered formalin. After separation of the lobes, 2 mm thick blocks were taken for paraffin embedding. Embedded blocks were sectioned at a thickness of 3 μm, and were stained with hematoxylin and eosin (H and E) to evaluate the degree of infiltration of eosinophils or lymphocytes in the airway from proximal to distal. Sections were also stained with periodic acid-Schiff (PAS) to evaluate the degree of proliferation of goblet cells in the bronchial epithelium. Pathological analysis of the inflammatory cells and epithelial cells in the airway of each lung lobe on the slides was performed using a Nikon ECLIPSE light microscope (Nikon Co, Tokyo, Japan).
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6

Histological and Immunohistochemical Analysis of Tissue

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After fixing with 5% formaldehyde, the eyes were embedded in paraffin and sectioned at 5-μm thickness. Following deparaffinization and rehydration, sections were hematoxylin and eosin (H&E) stained. The images were collected by Nikon Eclipse light microscope (Nikon Corporation). For immunohistochemistry, the sections were treated with Target Retrieval Solution (DakoCytomation) at 120 °C for 10 min. After blocking, they were incubated with anti-CD31 antibody (1:50; Santa Cruz Biotechnology) overnight at 4 °C and then were incubated with Alexa Fluor 488 conjugated rabbit anti-mouse IgG (1:500; Life Technologies) and 4′6-diamidino-2-phenylindole (DAPI). Slides were mounted with Ultramount Aqueous Permanent Mounting Medium (DakoCytomation) and observed with a confocal fluorescence laser microscope (LSM 700).
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7

Systematic Microscopic Sampling

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A well-established two-step systematic sampling was applied to all the samples at a certain final magnification (′380). Around 20 pictures per sample were obtained in a Nikon-Eclipse light microscope and printed in color. The BIC was analyzed on these colored prints using the intersection-counting methodologies.
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8

Histopathological Assessment of Testis

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A testis prepared in Bouin’s solution was embedded in paraffin and then thin sliced. After a slice was stained using hematoxylin and eosin (HE) according to the usual method, it was observed under a Nikon ECLIPSE light microscope (Nikon Co., Tokyo, Japan). Variables assessed included seminiferous epithelium damage, vacuolation of seminiferous tubules and interstitial edema.
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9

Quantification of Airway Inflammation and Goblet Cell Proliferation

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The remaining 6 mice in each group were used for pathological examination. The lungs were fixed by 10% neutral phosphate-buffered formalin. After separation of the lobes, 2-mm-thick blocks were taken for paraffin embedding. Embedded blocks were sectioned at a thickness of 3 μm, and then stained with hematoxylin and eosin (H & E) to evaluate the degree of infiltration of eosinophils and lymphocytes in the airway from proximal to distal. The sections were stained with periodic acid-Schiff (PAS) to evaluate the degree of proliferation of goblet cells in the bronchial epithelium. A pathological analysis of inflammatory cells and epithelial cells in the airway was performed using a Nikon ECLIPSE light microscope (Nikon Co., Tokyo, Japan). The degree of infiltration of eosinophils and lymphocytes in the airway or proliferation of goblet cells in the bronchial epithelium was graded in a blinded fashion: 0, not present; 1, slight; 2, mild; 3, moderate; 4, moderate to marked; 5, marked. ‘Slight’ was defined as less than 20% of the airway with eosinophilic inflammatory reaction or with goblet cells stained with PAS; ‘mild’ as 21 - 40%; ‘moderate’ as 41 - 60%; ‘moderate to marked’ as 61 - 80%; and marked as more than 80% of the airway
[18 (link),20 (link)].
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10

Histological Analysis of Mouse Liver

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For histological analyses, the mice were anesthetized by administering isoflurane (Ilsung Pharmaceuticals Co., Seoul, Korea). After opening the abdomen, liver tissues were immediately fixed in 10% buffered formalin and embedded in paraffin. Liver sections (5 μm) were deparaffinized in xylene tissue sections and dehydrated in 100%, 95%, 90%, 80%, and 70% ethanol, for 5 min each, before finally being rinsed with distilled water. These sections were stained with hematoxylin & eosin (H&E) and Masson's trichrome (MT, HT15-1KT, Sigma). MT staining was done using the MT stain kit (Sigma) in accordance with the manufacturer's instructions. Pathological analysis of inflammatory cells and collagen was done using a Nikon ECLIPSE light microscope (Nikon Co., Tokyo, Japan). Image analysis was also performed using ImageJ software (http://rsb.info.nih.gov/ij).
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